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A MATLAB toolbox for exporting publication quality figures
quality and portability of media produced. Basic syntax: export_fig(filename, [handle], options...)For a list of available options, run: help export_fig or: doc export_fig or read here
user_string
- Get/set a user specific string
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
append_pdfs
- Appends/concatenates multiple PDF files
toPPT is a powerful tool for generating powerpoint presentations programmatically defined in matlab.
export_fig
- Exports figures in a publication-quality format
pdftops
- Calls a local pdftops executable with the input command
ghostscript
- Calls a local GhostScript executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
user_string
- Get/set a user specific string
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2array
- Exports a figure to an image array
print2eps
- Prints figures to eps with improved line styles
MIB is a package for segmentation of multi-dimensional (2D-4D) microscopy datasets
export_fig
- Exports figures in a publication-quality format
copyfig
- Create a copy of a figure, without changing the figure
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
print2array
- Exports a figure to an image array
showcs3
- M-file for showcs3.fig
mib_rechopDatasetGui
- MATLAB code for mib_rechopDatasetGui.fig
ib_aboutDlg
- MATLAB code for ib_aboutDlg.fig
mib_measureTool
- MATLAB code for mib_measureTool.fig
mib_chopDatasetGui
- MATLAB code for mib_chopDatasetGui.fig
mib_keyShortcutsDlg
- MATLAB code for mib_keyShortcutsDlg.fig
ib_checkUpdate
- MATLAB code for ib_checkUpdate.fig
mib_saveHDF5Dlg
- MATLAB code for mib_saveHDF5Dlg.fig
mib_DriftAlignDlg
- M-file for mib_driftaligndlg.fig
ib_tubesVsSheets
- MATLAB code for ib_tubesVsSheets.fig
mib_stereologyGui
- MATLAB code for mib_stereologygui.fig
mib_MaskStatsProps
- MATLAB code for mib_MaskStatsProps.fig
ib_MorphOpsGui
- MATLAB code for ib_MorphOpsGui.fig
Microscopy Image Browser
- Image below shows the general overview of im_browser and explains names for the different parts of the program. Please refer to the table below for detailed description of each element.
Microscopy Image Browser Panels
- Here is a list of panels that are available in im_browser. Two of these panels are interchangeable (left and right interchangeable panels), i.e. their contents may be selected with two combo boxes in the Directory Contents Panel.
im_browser_filesListbox_Callback
- (hObject, eventdata, handles)
Generate a content-aware coarse triangulation of any image
ghostscript
- Calls a local GhostScript executable with the input command
print2array
- Exports a figure to an image array
copyfig
- Create a copy of a figure, without changing the figure
pdftops
- Calls a local pdftops executable with the input command
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
MatDRAM is a pure-MATLAB Adaptive Markov Chain Monte Carlo simulation and visualization library.
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
hyperlink
- create a string that is displayable as hyperlink in Matlab console
copyfig
- Create a copy of a figure, without changing the figure
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
isolate_axes
- Isolate the specified axes in a figure on their own
append_pdfs
- Appends/concatenates multiple PDF files
print2array
- Exports a figure to a bitmap RGB image array
print2eps
- Prints figures to eps with improved line styles
eps2pdf
- Convert an eps file to pdf format using ghostscript
2D-AL-DIC(Augmented Lagrangian DIC) is a fast, parallel-computing DIC algorithm which also considers global kinematic compatibility.
export_fig
- Exports figures in a publication-quality format
pdftops
- Calls a local pdftops executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2array
- Exports a figure to an image array
print2eps
- Prints figures to eps with improved line styles
markElementsDoerfler_pict
- : marks elements via Doerfler marking
Plotdisp_show
- : to plot DIC solved displacement components
parfor_progressbar
- Progress bar suitable for multi-process computation.
Finite-element-based global DIC method (guarantee global kinematic compatibility and decrease noise by adding regularization penalties).
export_fig
- Exports figures in a publication-quality format
pdftops
- Calls a local pdftops executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
Plotdisp_show
- : to plot DIC solved displacement components
parfor_progressbar
- Progress bar suitable for multi-process computation.
Adaptive Lagrangian Digital Volume Correlation - volumetric displacement and strain measurement based on a hybrid local-global approach
export_fig
- Exports figures in a publication-quality format
copyfig
- Create a copy of a figure, without changing the figure
pdftops
- Calls a local pdftops executable with the input command
ghostscript
- Calls a local GhostScript executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
crop_borders
- Crop the borders of an image or stack of images
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2array
- Exports a figure to an image array
print2eps
- Prints figures to eps with improved line styles
parfor_progressbar
- Progress bar suitable for multi-process computation.
plotExt_bodyslice.m
- Extensions for body and slice plottings %%%%%%%%%%%%%%%%
Matlab functions to plot 3D maps from indentation tests
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
crop_borders
- Crop the borders of an image or stack of images
print2eps
- Prints figures to eps with improved line styles
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
mmvn_logl_surface
- a 2d contour of the log likelihood surface
mmvn_fit
- fits a mixture of gaussians.
mmvn_expectation
- The expectation step in Expectation Maximizations
mmvn_getTheta
- creates structure theta from various inputs
mmvn_maximization
- the second step of the EM algorithm
plot_table
- plot a table to a figure window
Ogive optimization toolbox for deriving surface fluxes in challenging environments
export_fig
- Exports figures in a publication-quality format
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
user_string
- Get/set a user specific string
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
test_main.m
- Optimization of a simple (Rosenbrock) function, with no constraints
Test_xlwrite.m
- Test script for excel write (xlwrite in OS X)
A genetic algorithm is used to train a neural network controller to balance a stack of balls.
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
m_balls(n)
- Initialise balls
run_trial(E, NN, gene, x0, tex, mask, capture, gen)
- Run a trial of the balance and compute performance (gene fitness)
DynaSim simplifies the process of building and simulating models of dynamical systems.
export_fig
- Exports figures in a publication-quality format
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
print2eps
- Prints figures to eps with improved line styles
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2array
- Exports a figure to an image array
compareFigFiles2
- - compare .fig files or folders containing .fig files
compareFigFiles
- - compare .fig files or folders containing .fig files
linearMerge
- - linear export then import to merge 2 MDD objects
mdot
- - Export a dependency graph into DOT language
dsSimLog
- - if called, solve_ode files will inform about partial elapsed time at regular periods of the simulation
dsDemos_one_file_temp.m
- Setup
meanfield_NMDA_WMDM.m
- Tutorial of rate models of working memory and decision making in the frontoparietal cortex
Visualization of 4D dynamical system.
export_fig(varargin)
- EXPORT_FIG Exports figures in a publication-quality format
ghostscript(cmd)
- GHOSTSCRIPT Calls a local GhostScript executable with the input command
copyfig(fh)
- COPYFIG Create a copy of a figure, without changing the figure
pdftops(cmd)
- PDFTOPS Calls a local pdftops executable with the input command
print2eps(name, fig, export_options, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
crop_borders(A, bcol, padding, crop_amounts)
- CROP_BORDERS Crop the borders of an image or stack of images
user_string(string_name, string)
- USER_STRING Get/set a user specific string
fix_lines(fstrm, fname2)
- FIX_LINES Improves the line style of eps files generated by print
isolate_axes(ah, vis)
- ISOLATE_AXES Isolate the specified axes in a figure on their own
append_pdfs(varargin)
- APPEND_PDFS Appends/concatenates multiple PDF files
using_hg2(fig)
- USING_HG2 Determine if the HG2 graphics engine is used
print2array(fig, res, renderer, gs_options)
- PRINT2ARRAY Exports a figure to an image array
eps2pdf(source, dest, crop, append, gray, quality, gs_options)
- EPS2PDF Convert an eps file to pdf format using ghostscript
pdf2eps(source, dest)
- PDF2EPS Convert a pdf file to eps format using pdftops
im2gif(A, varargin)
- IM2GIF Convert a multiframe image to an animated GIF file
read_write_entire_textfile(fname, fstrm)
- READ_WRITE_ENTIRE_TEXTFILE Read or write a whole text file to/from memory
Analysis and design of composite blades for wind and hydrokinetic turbines
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
ghostscript(cmd)
- GHOSTSCRIPT Calls a local GhostScript executable with the input command
pdftops(cmd)
- PDFTOPS Calls a local pdftops executable with the input command
user_string(string_name, string)
- USER_STRING Get/set a user specific string
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
isolate_axes(ah, vis)
- ISOLATE_AXES Isolate the specified axes in a figure on their own
print2eps(name, fig, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
print2array(fig, res, renderer)
- PRINT2ARRAY Exports a figure to an image array
eps2pdf(source, dest, crop, append, gray, quality)
- EPS2PDF Convert an eps file to pdf format using ghostscript
pdf2eps(source, dest)
- PDF2EPS Convert a pdf file to eps format using pdftops
plotBestPoint(fig, x_current, OPT, BLADE, WEB, AF, z_oub, z_CP)
- re-assign some structure variable names (for convenience)
plotStructProps(iSIM, SIM, BLADE, StrProps, OUT)
- if OUT.PLOT_PRIN_ANG
plotLoads(iSIM, SIM, BLADE, AppLoads, ResLoads, OUT)
- if OUT.PLOT_APPLOADS
preProcessShearFlowData(NUM_SEC, x_tc, y_tc, Panel, xw_top, yw_top, xw_bot, yw_bot, nCells)
- concatenate some of the panel data, these data structures are more convenient to work with for the shear flow calculations
webCoords(Panel, xw_top, yw_top, xw_bot, yw_bot, nWebs, WEB_NODES)
- compute the x-y coordinates of the inside edge of the top panels
definePanel(flag, x_nodes, y_nodes, i_sNodes, i_wNodes, zSec, LamData)
- Collect the output
loadsApplied(zSec, NUM_SEC, HUB_RAD, PRE_CONE, ROT_SPD,
- vector of gravitational acceleration w.r.t. the global coordinate system
stressNormal(Panel, x_tc, y_tc, axial_stff, EIx, EIy,
- Collect the output
loadsResultant(zSec, NUM_SEC, AppLoads, x_cm, y_cm,
- aerodynamic center (point where the aerodynamic loads are applied)
bladeDisplacement(zSec, zFrac, NUM_SEC, ResLoads, flapI_mc,
- Compute correction factors for the displacements (correction factors for displacement of tapered cantilever beams)
structFitness(xo, iSIM, SIM, ANLS, OPT, ENV, BLADE, WEB, AF, MATS, Coord, z_oub, z_CP, nSegsTopBot)
- make sure the xo is a column vector
assignDesignVars(xo, OPT, BLADE, WEB, z_oub, z_CP)
- re-assign some structure variable names (for convenience)
defineLaminateData(xo, iSIM, SIM, OPT, BLADE, WEB, MATS, z_oub, z_CP, nSegsTopBot)
- re-assign some structure variable names (for convenience)
CoBlade_init(iSIM, SIM)
- read the main input file
dispCorrectionFactor(zFrac, NUM_SEC, I1, I2)
- This function calculates correction factors for displacment of tapered cantilever beams.
consolidator(x,y,aggregation_mode,tol)
- consolidator: consolidate "replicates" in x, also aggregate corresponding y
Allows users to infer minimal and optimal statistical predictors from time series data.
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
print2eps(name, fig, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
print2array(fig, res, renderer)
- PRINT2ARRAY Exports a figure to an image array
change_value(value, variableName, filePath)
- CHANGE_VALUE Change the value assigned to a unique variable in a file
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
FindCausalStates(freq, AlphabetLength, L_Max, alpha, DFName, increment)
- Find causal states
DeterminiserVI(Sigma, L_Max, AlphabetLength, increment, DFName)
- DeterminiserVI
MetricCalculator(Tmatrix, freq, freq2, L_Max, numstates, DFName, options)
- print metrics file
CSSR(data, Alphabet, L_Max, alpha, DFName, options, varargin)
- Append L value used to Data File name
PrintResults(States, freq, AlphabetLength, L_Max, FName)
- look at the strings in each state.
Create publication quality graphics, allowing rgb color scaling, pdf output and correct fontsizes.
figure.Also, export of pdf file format is implemented with help from OliverWoodford's export_fig package, available athttp://www.mathworks.com/matlabcentral/fileexchange/23629-exportfigThe file format of the
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
copyfig(fh)
- COPYFIG Create a copy of a figure, without changing the figure
pdftops(cmd)
- PDFTOPS Calls a local pdftops executable with the input command
ghostscript(cmd)
- GHOSTSCRIPT Calls a local GhostScript executable with the input command
user_string(string_name, string)
- USER_STRING Get/set a user specific string
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
isolate_axes(ah, vis)
- ISOLATE_AXES Isolate the specified axes in a figure on their own
print2eps(name, fig, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
print2array(fig, res, renderer)
- PRINT2ARRAY Exports a figure to an image array
pdf2eps(source, dest)
- PDF2EPS Convert a pdf file to eps format using pdftops
eps2pdf(source, dest, crop, append, gray, quality)
- EPS2PDF Convert an eps file to pdf format using ghostscript
exportfig(varargin)
- EXPORTFIG Export a figure
exampleExportfig.m
- EXAMPLEEXPORTFIG
Random walk model is made to explain the Brownian motion.
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
copyfig(fh)
- COPYFIG Create a copy of a figure, without changing the figure
print2array(fig, res, renderer)
- PRINT2ARRAY Exports a figure to an image array
eps2pdf(source, dest, crop, append, gray, quality)
- EPS2PDF Convert an eps file to pdf format using ghostscript
ghostscript(cmd)
- GHOSTSCRIPT Calls a local GhostScript executable with the input command
pdftops(cmd)
- PDFTOPS Calls a local pdftops executable with the input command
user_string(string_name, string)
- USER_STRING Get/set a user specific string
isolate_axes(ah, vis)
- ISOLATE_AXES Isolate the specified axes in a figure on their own
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
print2eps(name, fig, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
pdf2eps(source, dest)
- PDF2EPS Convert a pdf file to eps format using pdftops
exception_handling2(hObject)
- h = hObject.axes_of_data;
clearPlot(hObject,handles)
- h = handles.axes_of_data;
Perform fast and efficient spectral clustering algorithms
saveCurrentFigure(hObject, handles, FileName, PathName)
- saveCurrentFigure Saves current figure using export_fig
SimGraph_NearestNeighbors(M, k, Type, sigma)
- SIMGRAPH_NEARESTNEIGHBORS Returns kNN similarity graph
SimGraph_Full(M, sigma)
- SIMGRAPH_FULL Returns full similarity graph
SimGraph_Epsilon(M, epsilon)
- SIMGRAPH_EPSILON Returns epsilon similarity graph
relativepath( tgt_path, act_path )
- RELATIVEPATH returns the relative path from an actual path to the target path.
The export figure widget creates a basic toolbar button to export figures using export_fig
The Export Figure Widget creates a basic toolbar button to export figures using export_fig. Pressing the button opens an inputdlg to enter options for export_fig. The Export Figure Widget requires
Publish your MATLAB figures to the web with one line of code.
signin
- (username, api_key, plotly_domain) Sign In to a plotly session
AxonSeg is a GUI that performs axon and myelin segmentation on histology images.
pdftops
- Calls a local pdftops executable with the input command
fix_lines
- Improves the line style of eps files generated by print
as_Segmentation_full_image
- (im_fname,SegParameters,blocksize (# of pixels),overlap,output)
as_stitch_CorrectOutliers
- (configFileName,Dim_mosaic)
as_improc_rm_overlap
- (img,seg,blocksize)
A Matlab toolbox for cardiovascular signal processing
pdftops
- Calls a local pdftops executable with the input command
plot_ecg_heartbeat.m
- (Internal) obsolete, use plot_ecg_strip
image_dbr
- M-file for image_dbr.fig
qrs_detection_and_correction.m
- Use of ecg-kit for the detection-validation-correction of heartbeats in ECG
Easily create publishable ready figures. Great used with export_fig or on its own.
)'), ylabel('People')pubgraph(h,14,2,'w')Note: This doesn't save the figures. You can do this using the save button on the figure toolbar or using export_fig or other Matlab Central Files.Also: I have a pretty old version of Matlab, if someone
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis
export_fig
- Exports figures in a publication-quality format
pdftops
- Calls a local pdftops executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
sobol_test03.m
- SOBOL_TEST03 tests BIT_LO0_BASE_2.
sobol_test02.m
- SOBOL_TEST02 tests BIT_HI1_BASE_2.
canlab_prep_bidsdir
- Convert a BIDS directory for canlab_glm_subject_levels compatibility
orthviews
- display (SPM) for CANlab image_vector (or fmri_data, statistic_image) object
cluster_tool_masktypeq
- M-file for cluster_tool_masktypeq.fig
cluster_tool_maskq
- M-file for cluster_tool_maskq.fig
cluster_tool_writemasktypeq
- M-file for cluster_tool_writemasktypeq.fig
is_kuratowski_graph
- Test if a graph can be collapsed to K_3,3 or K_5
cluster_tool_tools
- M-file for cluster_tool_tools.fig
cluster_tool_subdivide
- M-file for cluster_tool_subdivide.fig
cluster_tool_edit
- M-file for cluster_tool_edit.fig
cluster_tool_thresh
- M-file for cluster_tool_thresh.fig
cluster_tool_append
- M-file for cluster_tool_append.fig
cluster_tool_table
- M-file for cluster_tool_table.fig
cluster_tool_getbetas
- M-file for cluster_tool_getbetas.fig
breadth_first_search
- Fully wrap the Boost breadth_first_search call
depth_first_search
- Fully wrap the Boost depth_first_search call
preprocess
- es data in an image_vector (e.g., fmri_data) object; many options for filtering and outlier id
createFit
- (NUM_FEATS,MEAN_R)
edge_weight_vector
- Returns input for the edge_weight option for a weighted
sobol_test04.m
- SOBOL_TEST04 tests SOBOL.
EstimateHRF_inAtlas
- takes a raw 4D fmri_data object, preprocesses it, and
pdist_plot
- Given a high-dimensional dataset, pdist_plot produces a density plot
cluster_tool
- M-file for cluster_tool.fig
test_searches.m
- astar_search
nearest_neighbors
- Compute the "n_neighbors" nearest points for each data
sobol_test01.m
- SOBOL_TEST01 tests EXOR.
sobol_test.m
- SOBOL_TEST runs the Sobol tests.
sobol_test05.m
- SOBOL_TEST05 tests SOBOL.
predict
- outcome (Y) from brain data and test cross-validated error rate for an fmri_data object
Olivine LPO simulation
export_fig
- Exports figures in a publication-quality format
pdftops
- Calls a local pdftops executable with the input command
ghostscript
- Calls a local GhostScript executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
user_string
- Get/set a user specific string
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
print2array
- Exports a figure to an image array
print2eps
- Prints figures to eps with improved line styles
eps2pdf
- Convert an eps file to pdf format using ghostscript
A Matlab GUI to plot and to analyze (nano)indentation data (obtained with conical indenters)
export_fig
- Exports figures in a publication-quality format
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
print2eps
- Prints figures to eps with improved line styles
print2array
- Exports a figure to an image array
Group ICA/IVA software (MATLAB)
isolate_axes
- Isolate the specified axes in a figure on their own
append_pdfs
- Appends/concatenates multiple PDF files
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
ghostscript
- Calls a local GhostScript executable with the input command
hyperlink
- create a string that is displayable as hyperlink in Matlab console
pdftops
- Calls a local pdftops executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
append_pdfs2
- Appends/concatenates multiple PDF files
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
print2array
- Exports a figure to a bitmap RGB image array
export
- a GIfTI object into specific MATLAB struct
post_process_spatial_chronnectome
- MATLAB code file for post_process_spatial_chronnectome.fig
input_mancovan_univariate.m
- Use full path for directories and files wherever needed. After entering parameters, use command icatb_mancovan_batch(input_file);
input_mancovan_stepwise.m
- Use full path for directories and files wherever needed. After entering parameters, use command icatb_mancovan_batch(input_file);
input_mancovan_ttests.m
- Use full path for directories and files wherever needed. After entering parameters, use command icatb_mancovan_batch(input_file);
input_mancovan.m
- Use full path for directories and files wherever needed. After entering parameters, use command icatb_mancovan_batch(input_file);
input_dfnc.m
- Use full path for directories and files wherever needed. After entering parameters, use command icatb_dfnc_batch(input_file);
dyn_fc_toolbox
- M-file for dyn_fc_toolbox.fig
sdfnc_post_process
- MATLAB code for sdfnc_post_process.fig
results_summary_gui
- MATLAB code for results_summary_gui.fig
setup_reference_ica
- MATLAB code file for setup_reference_ica.fig
spatial_dynamics_hierarchy
- MATLAB code for spatial_dynamics_hierarchy.fig
dynamic_functional_conn
- MATLAB code for dynamic_functional_conn.fig
setup_dyn_fc
- MATLAB code file for setup_dyn_fc.fig
post_process_dfnc
- MATLAB code for post_process_dfnc.fig
post_process_sdh
- MATLAB code for post_process_sdh.fig
dfnc_toolbox
- M-file for dfnc_toolbox.fig
noisecloud_gui
- M-file for noisecloud_gui.fig
dynamic_coherence
- MATLAB code for dynamic_coherence.fig
spatial_chronnectome
- MATLAB code for spatial_chronnectome.fig
sdfnc_toolbox
- M-file for sdfnc_toolbox.fig
dfdc_toolbox
- MATLAB code for dfdc_toolbox.fig
component_labeller
- M-file for component_labeller.fig
mancovan_toolbox
- M-file for mancovan_toolbox.fig
windowless_fc
- MATLAB code for windowless_fc.fig
loadobj
- for file_array class
disp
- lay a file_array object
Calculate neutral surfaces in the ocean
export_fig
- Exports figures in a publication-quality format
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
crop_borders
- Crop the borders of an image or stack of images
user_string
- Get/set a user specific string
isolate_axes
- Isolate the specified axes in a figure on their own
print2array
- Exports a figure to an image array
print2eps
- Prints figures to eps with improved line styles
eps2pdf
- Convert an eps file to pdf format using ghostscript
fig_map
- Produce figure maps
pot_dens_surf_vertsolve_codegen
- Create MEX function for pot_dens_surf_vertsolve
ntp_midpoint_to_casts_codegen
- Create MEX function for ntp_midpoint_to_casts
ntp_bottle_to_cast_codegen
- Create MEX function for ntp_bottle_to_cast
bfs_conncomp1_wet_codegen
- Create MEX function for bfs_conncomp1_wet
delta_surf_vertsolve_codegen
- Create MEX function for delta_surf_solver
prim_mst_perf.m
- Help debug prim_mst performance
omega_vertsolve_codegen
- Create MEX function for omega_vertsolve
bfs_conncomp1_codegen
- Create MEX function for bfs_conncomp1
bfs_conncomp_codegen
- Create MEX function for bfs_conncomp
tbs_vertsolve_codegen
- Create MEX function for tbs_vertsolve
obs_vertsolve_codegen
- Create MEX function for obs_vertsolve
performance_comparison.m
- Compare performance of gaimc to matlab_bgl
Finite element solution of a contact problem with a Tresca friction by the semismooth* Newton method.
user_string
- Get/set a user specific string
isolate_axes
- Isolate the specified axes in a figure on their own
append_pdfs
- Appends/concatenates multiple PDF files
crop_borders
- Crop the borders of an image or stack of images
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
hyperlink
- create a string that is displayable as hyperlink in Matlab console
print2eps
- Prints figures to eps with improved line styles
print2array
- Exports a figure to a bitmap RGB image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
An unconstrained minimization of FEM discretized energies.
export_fig
- Exports figures in a publication-quality format
crop_borders
- Crop the borders of an image or stack of images
print2array
- Exports a figure to an image array
We provide an alternative to the function rotm2eul from Robotics System Toolbox and comparisons.
export_fig
- Exports figures in a publication-quality format
crop_borders
- Crop the borders of an image or stack of images
print2array
- Exports a figure to an image array
Detailed implementation of Bogner-Fox-Schmit elements.
export_fig
- Exports figures in a publication-quality format
crop_borders
- Crop the borders of an image or stack of images
print2array
- Exports a figure to an image array
A quasistatic evolution of viscoelastic von Kármán plates.
export_fig
- Exports figures in a publication-quality format
ghostscript
- Calls a local GhostScript executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
pdftops
- Calls a local pdftops executable with the input command
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
Let's build brains together!
Crack Monitor - A software for automation of fatigue crack-growth measurements.
Software for automation of fatigue crack-growth measurements.This software requires export_fig by Oliver J. Woodford and Yair Altman, which is already included.Also available at
export_fig
- Exports figures in a publication-quality format
Tester_Settings
- M-file for Tester_Settings.fig
isolate_axes
- Isolate the specified axes in a figure on their own
crop_borders
- Crop the borders of an image or stack of images
This is an application written in MATLAB that can read GRIB1 files and visualize meteorological parameters.
, Github repository(https://github.com/nctoolbox/nctoolbox)export_fig by Oliver Woodford and Yair Altman, GitHub repository(https://github.com/altmany/export_fig/releases/tag/v3.34)Efficient GRIB1 data
crop_borders
- Crop the borders of an image or stack of images
SIMUDEC Comminution Circuits Simulator
PKPD model for ACE inhibition with benazapril or cilazapril
export_fig
- Exports figures in a publication-quality format
run_PKPD_without_GUI
- (drugname,renalfunction,pill_mg,num_doses_per_day,tfinal_dosing,sim_time_end)
pub_plots_for_param_est_with_CI.m
- Combines & constructs plots for parameter estimation output for all cases for PK-PD model for ACE inhibition
pub_plots_for_globalsensitivity.m
- Combines & constructs plots for global sensitivity output for all cases for PK-PD model for ACE inhibition
user_string
- Get/set a user specific string
pub_plots_for_param_est.m
- Combines & constructs plots for parameter estimation output for all cases for PK-PD model for ACE inhibition
pub_plots_for_localsensitivity.m
- Combines & constructs plots for local sensitivity output for all cases for PK-PD model for ACE inhibition
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
Extracts the necessary parameters from the file and uses Hart's method to identify the location and intensity of a Medicane.
, R. Signell, A. Crosby, Github repository(https://github.com/nctoolbox/nctoolbox)export_fig by Oliver Woodford and Yair Altman, GitHub
crop_borders
- Crop the borders of an image or stack of images
A modular code for teaching Surrogate Modeling-Based Optimization
crop_borders
- Crop the borders of an image or stack of images
ghostscript
- Calls a local GhostScript executable with the input command
copyfig
- Create a copy of a figure, without changing the figure
eps2pdf
- Convert an eps file to pdf format using ghostscript
print2eps
- Prints figures to eps with improved line styles
export_fig
- Exports figures in a publication-quality format
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
pdftops
- Calls a local pdftops executable with the input command
print2array
- Exports a figure to an image array
Exports data from MATLAB .fig file to HDF5 file.
This script exports the data and metadata contained within a MATLAB .fig file and puts it into an HDF5 file. Supports multiple subplots, error bars, axes labels, contour plots, histograms, and more
export_fig
- exports data from MATLAB .fig file to hdf5 file
WITio: A MATLAB data evaluation toolbox to script broader insights into big data from WITec microscopes
A GUI for sovling TSP's using Simulated Annealing
stsp_v61_export(varargin)
- STSP_V61_EXPORT M-file for stsp_v61_export.fig
stsp_v61(varargin)
- STSP_V61 M-file for stsp_v61.fig
ParaPIV is a parallel version PIVlab for Particle Image Velocimetry (PIV) post-processing.
exportfig
- Export a figure.
PIVlab_citing
- MATLAB code for PIVlab_citing.fig
PIVlab_Quickview
- MATLAB code for PIVlab_Quickview.fig
Send messages and plots from Matlab to a secure Telegram channel
`.### Sending a message or a plot`herald(text)` sends the message _text_ to the channel.`herald(figHandle)` sends the figure with handle _figHandle_ as a PNG directly to the channel.`msg = herald(...)` returns
heraldCore
- Communicate with Telegram channel through @herald_matlab_bot
crop_borders
- Crop the borders of an image or stack of images
isolate_axes
- Isolate the specified axes in a figure on their own
user_string
- Get/set a user specific string
A New Tool for Telomere Length Measurement from TRF Analysis
export_fig(varargin)
- EXPORT_FIG Exports figures suitable for publication
print2eps(name, fig, varargin)
- PRINT2EPS Prints figures to eps with improved line styles
print2array(fig, res, renderer)
- PRINT2ARRAY Exports a figure to an image array
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
user_string(string_name, string)
- USER_STRING Get/set a user specific string
isolate_axes(ah, vis)
- ISOLATE_AXES Isolate the specified axes in a figure on their own
Easily export LaTeX equations as png, pdf, etc. using export_fig
export_tex(TeXstr,filename,varargin)
- export_tex creates image files of LaTeX equations using export_fig. The
V053 - Conversion of a Matlab figure to a LaTeX file with PSTricks compatible macros
. The matlab code is based on the fig2tex file by Ercan Solak in 2005.You can also download the latest version on http://fig2texps.peter-scholz.netSupported Features: * 2D plots with arbitrary number
GUI wrapper for export_fig - add toolbar items to any/all figures
Wrapper for export_fig - to add toolbar icons to all figure windows. efigure - figure with export-fig toolbar icons built in Add toolbar icons which for saving images to clipboard (PC only) or
Media browsing, analysis and annotation
pdftops
- Calls a local pdftops executable with the input command
ghostscript
- Calls a local GhostScript executable with the input command
fix_lines
- Improves the line style of eps files generated by print
Visualization software for high dimensional data
pdftops
- Calls a local pdftops executable with the input command
fix_lines
- Improves the line style of eps files generated by print
PhenoPlot_gui
- MATLAB code for PhenoPlot_gui.fig
heatmap_examples.m
- Single heatmap with default values
Automatic ©Matlab application for fitting log-normal and 'power-law' distribution to empirical data, following the goodnes-of-fit based appr
copyfig
- Create a copy of a figure, without changing the figure
ghostscript
- Calls a local GhostScript executable with the input command
isolate_axes
- Isolate the specified axes in a figure on their own
print2array
- Exports a figure to an image array
eps2pdf
- Convert an eps file to pdf format using ghostscript
pdftops
- Calls a local pdftops executable with the input command
user_string
- Get/set a user specific string
crop_borders
- Crop the borders of an image or stack of images
print2eps
- Prints figures to eps with improved line styles
Draw any graph and export it as fig and save its adjacency matrix
Toolbox to help estimate SVAR and input inpulse responses
fix_lines
- Improves the line style of eps files generated by print
ghostscript
- Calls a local GhostScript executable with the input command
pdftops
- Calls a local pdftops executable with the input command
This package enables the use of all fonts that are supported by LaTeX in a figure.
matlabfrag to support also non math fonts.The linestyles are corrected using the ‘fix_lines.m’ script from export_fig. The major drawback of this approach is that it requires a complete LaTeX collection to
fix_lines(fname, fname2)
- FIX_LINES Improves the line style of eps files generated by print
A function for saving all open figures in MATLAB.
A function for saving all open figures in MATLAB.The function saves all the open figures as .PNG and .FIG files. The output folder path is an optional argument of the function.Each figure is saved
saveallfigs
- Saves and exports all open figures to FIG and PNG files.
Fergus debluring algorithm
ExportFig(Fig_Num,fname,mode,Res)
- Author: Rob Fergus
initialize_parameters2(obs,blur,im,true_blur,true_im,pres,prior,prior_num,mode_im,mode_blur,obs_im,big_blur,spatial_mask,priors,FFT_MODE,COLOR,nLayers)
- Author: Rob Fergus
fiddle_lucy3(file_name,LUCY_ITS_IN,SAVE_TO_DISK,SCALE_OFFSET_IN,THRESHOLD_IN)
- % Rountine to call Richardson-Lucy algorithm after kernel inference
fiddle_lucy4(file_name,LUCY_ITS_IN,SAVE_TO_DISK,SCALE_OFFSET_IN,THRESHOLD_IN)
- % Routine to call Richardson-Lucy algorithm after kernel inference
train_ensemble_put_lambda(c,dimensions,log_lambda_x,c_log_lambda_x)
- Author: James Miskin
train_ensemble_main6(dimensions,initial_x1,initial_x2,opt_func,text,options,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12)
- Author: James Miskin, adapted by Rob Fergus
train_ensemble_get_lambda(c,dimensions,log_lambda_x)
- Author: James Miskin
train_ensemble_evidence6(step_len,dimensions,opt_func,ensemble,direction,state,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12)
- Author: James Miskin, adapted by Rob Fergus
automatic_patch_selector(im,patch_size,weight,sat_mask)
- Author: Rob Fergus
move_level(mx,me,K,L,M,N,mode,resize_step,center)
- Author: Rob Fergus
train_ensemble_rectified5(x1,x2,type)
- Author: James Miskin, adpated by Rob Fergus
train_blind_deconv(dimensions,ensemble,D,Dp,I,J,K,L,M,N)
- Author: James Miskin, adapted by Rob Fergus
train_ensemble_put(c,dimensions,x,cx)
- Author: James Miskin
train_ensemble_get(c,dimensions,x)
- Author: James Miskin
create_greenspan_settings(varargin)
- Author: Bryan Russell
estimate_priors2(fname,imn,num,num_scales,type)
- Author: Rob Fergus
delta_kernel(s)
- Author: Rob Fergus
plotgray(tmp_name)
- Author: Rob Fergus
mix_exponentials.m
- Author: Rob Fergus
rgb2gray_rob(r,g,b)
- Author: Rob Fergus, adapted from Mathwords version
fix_image(in,reference)
- Author: Rob Fergus
deblur(CONFIG_FNAME)
- Author: Rob Fergus
clip_image(im,minval,maxval)
- Author: Bryan Russell
INSIDDE THz Toolbox provides various methods for THz image analysis.
exportfig(varargin)
- EXPORTFIG Export a figure.
export_crossing_maps(painter, include_lines)
- EXPORT_CROSSINGS_MAPS Exports all crossing maps for a painter
export_distance_maps(painter)
- EXPORT_DISTANCE_MAPS Exports all distance maps to images
foe_energy_grad_x(x, basis, W, a, size_im)
- FOE_ENERGY_GRAD_x Computes gradient of FoE energy function at point x
foe_energy_grad_w(x, im, basis, a)
- FOE_ENERGY_GRAD_W Computes gradient of FoE energy function at point x
train_crossing_detector(X, labels, crossing_type)
- TRAIN_CROSSING_DETECTOR Trains a logistic regression-based crossing detector
ransac_neighbor_search(r, c)
- RANSAC_NEIGHBOR_SEARCH Performs RANSAC neighbor search for all edge crossings
match_distance_maps(maps)
- MATCH_DISTANCE_MAPS Vertically matches two thread distance maps
read_thz_data(inputfile, savefile)
- READ_THZ_DATA The function reads in a THz data file and converts it to a MAT file
foe_energy_a(x, im, basis, W)
- FOE_ENERGY_A Compute value of FoE energy function for a specific a
train_deep_autoenc(X, layers, lambda)
- TRAIN_DEEP_AUTOENC Trains a deep feedforward autoencoder on X
apply_pictorial_structures(response, lambda, move_x, move_y, var_x, var_y, part_response)
- PICTORIAL_STRUCTURES Uses pictorial structures model to clean responses
logreg_grad(x, train_X, train_labels, lambda, pos_E, pos_E_bias)
- LOGREG_GRAD Gradient of L2-regularized logistic regressor
lmtl_grad_p2(x, W, X, labeled_X, labels, loss, triplets, mu, lambda, triplet_diff1, triplet_diff2)
- LMTL_GRAD Computes large-margin triplet learning gradient w.r.t. P
predict_logreg(test_X, E, E_bias)
- PREDICT_LOGREG Evaluate logistic regressor
train_autoencoder(X, layers, noise, max_iter)
- TRAIN_AUTOENCODER Trains an simple autoencoder
foe_energy(x, basis, W, a, size_im)
- FOE_ENERGY Compute value of FoE energy function at point x
make_maps(r, c, im_size, rescaling)
- MAKE_MAPS Make map of the distances and orientations of threads
em_mot(X, k, max_iter, init)
- EM_MOT Performs the EM algorithm for a mixture of t-distributions
L2_distance(a, b)
- L2_DISTANCE - computes Euclidean distance matrix
denoise_foe(im, basis, W, a, sigma)
- DENOISE_FOE Denoise image using Field of Experts prior model
inpaint_foe(im, mask, basis, W, a)
- INPAINT_FOE Perform inpainting on image using Field of Experts prior
make_annotations(painter)
- MAKE_ANNOTATIONS Simple annotator tool for paintings
orientation_analysis(im, scale1, scale2)
- ORIENTATION_ANALYSIS The function performs orientation analysis of the specified image
lmtl_classify(X, W, P, lablist)
- LMTL_CLASSIFY Performs classification using LMTL classifier
vangogh_experiment.m
- [X, crossing_type, mean_move, var_move] = gather_dataset(painter, cell_size, block_size);
run_data_through_autoenc(network, X)
- RUN_DATA_THROUGH_AUTOENC Intermediate representation and reconstruction
foe_energy_grad_a(x, im, basis, W)
- FOE_ENERGY_GRAD_W Computes gradient of FoE energy function at point x
apply_crossing_detector(W, im, cell_size, block_size)
- APPLY_CROSSING_DETECTOR Applies a crossing detector on the specified painting
lmtl_grad_w(x, P, labeled_X, labels, loss, mu, lambda)
- LMTL_GRAD_W Computes large-margin triplet learning gradient w.r.t. W
get_painting_list(painter)
- GET_PAINTING_LIST Gets a list of paintings for the specified painter
structure_tensor_scale(im, scale1, scale2)
- STRUCTURE_TENSOR_SCALE The function computes multi-scale structure tensors for image
train_logreg(train_X, train_labels, lambda, E_init, E_bias_init)
- TRAIN_LOGREG Trains an L2-regularized logistic regressor
lmtl_grad_p(x, W, X, labeled_X, labels, loss, triplets, mu, lambda, triplet_diff1, triplet_diff2, slack)
- LMTL_GRAD Computes large-margin triplet learning gradient w.r.t. P
gather_dataset(painter, cell_size, block_size)
- GATHER_DATASET The function gathers a data set of thread crossings
train_foe_pcd(images, basis, no_experts, a)
- TRAIN_FOE Trains a Field of Experts model on a collection of images
construct_codebook(images, n, size_patch, method)
- CONSTRUCT_CODEBOOK Constructs a texton codebook
train_foe(images, basis, no_experts, a)
- TRAIN_FOE Trains a Field of Experts model on a collection of images
extract_features(dataFolder, imFormat, size_patch, method)
- SAVE_FEATURES Constructs a labeled dataset containing texton PDFs
image_gradient(I)
- IMAGE_GRADIENT Estimates gradient properties of an image
symm_ica(X)
- SYMM_ICA Performs symmetric ICA
em_mog(X, K, nrIter, init)
- EM_MOG Performs the EM algorithm for multivariate Gaussian mixtures
analyze_painting(filename, codebook)
- ANALYZE_PAINTING Extract texton histograms from a single painting
gauss_deconv(I, gf, s)
- GAUSS_DECONV The function performs Gaussian deconvolution of an image
mdn(nin, nhidden, ncentres, dim_target, mix_type, prior, beta)
- MDNCreates a Mixture Density Network with specified architecture.
gtm(dim_latent, nlatent, dim_data, ncentres, rbfunc, prior)
- GTMCreate a Generative Topographic Map.
demmet1(plot_wait)
- DEMMET1 Demonstrate Markov Chain Monte Carlo sampling on a Gaussian.
som(nin, map_size)
- SOMCreates a Self-Organising Map.
rbfevfwd(net, x, t, x_test, invhess)
- RBFEVFWD Forward propagation with evidence for RBF
gtminit(net, options, data, samp_type, varargin)
- GTMINIT Initialise the weights and latent sample in a GTM.
JAABA: The Janelia Automatic Animal Behavior Annotator
exportfig
- Export a figure to Encapsulated Postscript.
mdot
- - Export a dependency graph into DOT language
test_choose_orientations.m
- test_choose_orientations
sbfmf_write_gui
- M-file for sbfmf_write_gui.fig
fmf_write_frame
- ( fp, data, stamp, data_format )
playfmf_interestpoints
- M-file for playfmf_interestpoints.fig
fmf_animate
- ( filename, f_start, nframes, incr, flip, cm, aoi )
subsref
- Access parameters of ALT_BA optical flow algorithm
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