770 results

This repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti htt

Electrophysiology-Tutorial-for-Neuroscience_jpThis repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

This video-based course introduces learners to the power of MATLAB in different areas of neuroscience. Each module covers a different topic.

# Essentials of Neuroscience with MATLABThe Essentials of Neuroscience With MATLAB course was developed to provide advanced undergraduates and early graduate students with a basic familiarity with

The most advanced toolbox for neuroscience stimulus presentation, response collection and data collection.

Psychophysics Toolbox Version 3 (or short "PTB") extends MATLAB with functions for research grade neuroscience stimulus presentation and response collection. The PTB core routines provide trustworthy

Neuroscience

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience.

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel

Analyze neural spike train and continuous time data using point process methods

are frequently obtained from neuroscience experiments and our intention in writing nSTAT is to facilitate quick, easy and consistent neural data analysis.One of nSTAT's key strengths is point process

Plotting and Analysis of Neuroscience Database-Oriented Research Applications

Automated analysis of common behavior tasks used by the neuroscience community

This work includes automated routines for the analysis of several commonly used behavior tasks used by the neuroscience community. We automated the scoring of: Barnes Maze, Social interaction

Neural Data Toolbox (NDTb) is toolbox developed for neuroscience data processing.

Generates trial sequences for factorial designs. Optimized for behavioral neuroscience experiments.

MDD allows the implementation of multidimensional Python-esque dictionaries in MATLAB.

This is a tutorial designed to get MATLAB newbies up and running quickly.

Image Acquisition for Behavioral Neuroscience

rodent_EEG_data_analysis_for_neuroscience

rodent_EEG_data_analysis_for_neuroscience

A toolbox for processing electrophysiological data

Scientific data acquisition for physiology and neuroscience

feedback at the HHMI Janelia Farm Research Campus in cutting edge neuroscience applications.This software is written in the Matlab scientific programming environment; as such, it supports all of the hardware

NDI (Neuroscience Data Interface) is a cross-platform interface standard for reading neuroscience data and storing the results of analyses

Issues](.github/badges/code_issues.svg)](https://github.com/VH-Lab/NDI-matlab/security/code-scanning)[](https://gitHub.com/VH-Lab/NDI-matlab/graphs/commit-activity)Neuroscience Data Interface - A means of specifying and accessing neuroscience data and analyses2024-04-29: The main branch now holds the code for NDI 2 beta. You can get NDI 1.0.1 on the `ndi1_legacy` branch

Electrophysiology data analysis

Clarinet is a MATLAB^® app designed to analyze electrophysiology experiments.Developed for neuroscience research, Clarinet allows you to analyze neuronal signals acquired with a variety of

Read a TIFF stack as a memory-mapped tensor. Handles a large range of internal TIFF formats.

Install the MinGW-w64 C/C++/Fortran compiler for Windows

A MATLAB toolbox for interacting with the Allen Brain Observatory

). A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. Nature Neuroscience, 23, 138-151

Toolbox for nonlinear analysis of multivariate time series with ordinal-patterns-based measures

Scientific workflow management framework built on top of a relational database.

Recognize 3D structures in volumetric images

ObjectFinder is a MATLAB app that allows you to recognize a large number of small structures within a three-dimensional image volume. This app is developed for neuroscience research, with the purpose

Simple interactive tracing software for neuronal axons and dendrites

Efficiently computing values of permutation entropy from 1D time series in sliding windows

Cluster based permutation test for time series data

Neuroscience Methods, 164(1), 177–190. https://doi.org/10.1016/j.jneumeth.2007.03.024

Real time channel streaming with the CED's Power1401 device.

a version of abfload which is capable of reading abf 2.0 files

Fast and accurate spike sorting toolbox

Fast, complete two-photon pipeline

Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.

Implements an improved regularity analysis for spike trains obtained from auditory neurons.

Computes the peri-stimulus time histogram for neural spike times

BRain area Input Output

Complete Matlab pipeline for large scale calcium imaging data analysis

Plotting Routine to display neural spike trains

Detection of location of spike times

Toolbox for automated sorting of cellular calcium signals from optical imaging data.

A toolbox for complex-network analysis of structural and functional brain-connectivity data.

Visualize networks in your EEG data

purpose is visually summarized in the attached screenshot.I used the topoplot_connect function while developing a method for isolating transient task-induced networks in the brain at Cognitive Neuroscience

Basic (demo) 2-photon microscope scanning software

A Matlab code for Brain MRI Tumor Detection and Classification

DPABI is a GNU/GPL* toolbox for Data Processing & Analysis of Brain Imaging.

This is a RESTful way to obtain the atlas images for specific anatomical coordinates (ap,ml,dv).

The circulant matrix generated from a vector as the first row (or first column)

Anakyze spike trains exported from multi-electrode arrays

Let's learn how to mine data from the web with MATLAB-based web scraping tools, with NeurIPS machine learning conference paper examples.

previously known as NIPS) is an annual conference on machine learning and computational neuroscience, and papers presented there reveals what experts in the field are working on.Let's apply web scraping to

The Rodent Tracker app analyzes overhead-view videos with high-contrast backgrounds to track rodent movement by overlaying an ellipse.

Plots spike rasters from spike times or binary trains. Faster than most implementations.

Read ROIs and ROI sets saved from ImageJ into MATLAB, without java.

A Full-Fledged MATLAB Based Tetris Game like none you've ever seen!

faster with the toolbox since it is entirely base on OpenGL. I made this game in my spare time. I'm just a neuroscience student who does experiments for 10+ hours everyday, so it took me years to

Set of functions for the basic analysis of spike data from neurophysiological experiments

BrainMaps Analyze is a powerful tool for applying image analysis routines to BrainMaps.org high reso

This function visualizes raw (grouped) data along with the mean, 95% confidence interval, and 1 SD.

Toolbox for analysis and visualization of fNIRS data

DynaSim simplifies the process of building and simulating models of dynamical systems.

This function identifies and removes spikes fra a trace of and membrane potential recording.

Kernel density estimation with bandwidths locally adapted to data.

Shigeru Shinomoto% Kernel Bandwidth Optimization in Spike Rate Estimation % Journal of Computational Neuroscience 2010% http://dx.doi.org/10.1007/s10827-009-0180-4%% * Instead of a Gaussian window described