Are there a toolbox that help me to represent files .fastq from NGS how array (log2Ratio vs base_position)?

I watched the webinar Next Generation sequencing with Bioinformatics Toolbox:...ChIP-Seq Data, but I need to visualize the information in arrays, example HR-CGH, is it possible? I'm not expert in genetic but I want to apply some statistical tools to these data.

Thanks

Answer 1

[Luuk van Oosten]

Yes. You can import .fastq files that contain NGS data. click here for an intro. To import .fastq files use somthing like:

FASTQStruct = fastqread(yourfile)

To apply statistical tools... see the rest of the documentation

[munoz minjares]

These are the tools that I was looking for the first stage of my research. Thank you!

Answer 2

[Paola Favaretto]

Can you provide more details?

.fastq files contain sequence and quality information only. Would you like to plot quality vs. position?

[munoz minjares]

I'd like to plot position vs LogRratio or position vs Log2Ratio, is this possible from NGS files?