Constructing full matrix like a sparse one

5 views (last 30 days)
I was wondering if there was a way to construct a full matrix like you would a sparse matrix.
I'm working with single photon data so my images are histograms of counts that I read from the bits in my data stream. Due to how sparse works I've found that it is faster to do my histogramming using sparse with 4 inputs, S = sparse(i,j,v,m,n), as it sums values that have the same indicies but this is innefficent as depending on how I want the data read it results in arrays with very low sparsity. I was wondering if there was an equivalent way to do this immediately into a full array.
Here's the relevant part of my code
% number of exposures for macro time
frameNos = 0:macroFrames:NFrames;
fBins = uint32(discretize(f,frameNos));
nExps = NFrames/macroFrames;
% generates sparse array Y*X*B x F
bin1 = y+(x-1).*NPixHeight+(b-1).*NPixHeight.*NPixWidth;
bin2 = fBins;
SpCounts = sparse(bin1,bin2,1,NPixHeight*NPixWidth*NBins,nExps);
Generally macroFrames is large so SpCounts is not sparse and therefore very memory inefficient. I imagine appending full() would fix my memory problem but I'm curious if going straight to a full array would be faster?

Accepted Answer

Steven Lord
Steven Lord on 3 Aug 2023
It doesn't have exactly the same syntax as the sparse function, but I'd recommend you look at the accumarray function.

More Answers (0)

Categories

Find more on Sparse Matrices in Help Center and File Exchange

Products


Release

R2022a

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!