Calculating Phase difference from workspace data

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As you can see from the diagram below, I have generated two wave functions from the workspace data and now I am interested in calculating/obtaining the phase difference between the two. Is there any efficient way of doing it in MATLAB or some mathematical formulation that I might be able to use?
FYI: My aim is to plot the bode plot eventually from different sets of data, let's say for an unknown system.

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Navaneeth Raman
Navaneeth Raman on 21 Apr 2015

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