General Viterbi Algorithm

Version 1.0.0.0 (1.49 KB) by Jacob Shin
This function runs Viterbi algorithm given valid parameters and returns optimal path into a file (ou
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10.6K Downloads
Updated 11 May 2006

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General implementation of matlab version of Viterbi algorithm specifically written for gene structure finding problem in mind. However, it can be modified to suit the goal of a user.

Input:
Transition Probability Matrix
Emission Probability Matrix
Initial Probability Matrix
States Matrix (ie. Exon,Intron, Intergenic, etc.)
Sequence File Name <-- Optional
Output:
Most probable state sequence ('Path') into output.txt

Further Detail: http://en.wikipedia.org/wiki/Viterbi_algorithm

Cite As

Jacob Shin (2026). General Viterbi Algorithm (https://www.mathworks.com/matlabcentral/fileexchange/11050-general-viterbi-algorithm), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R14
Compatible with any release
Platform Compatibility
Windows macOS Linux
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Version Published Release Notes
1.0.0.0