STXM data analysis script collection - STACKLab

STXM data analysis script collection with stack exploration GUI tool STACKLab
Updated 13 Jul 2009

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This is a MATLAB script collection developed at Lawrence Berkeley National Lab that can be used as a basis for Scanning Transmission X-ray Microscopy (STXM) data analysis.

It includes routines for the following basic tasks:

- raw stack data import
- image alignment
- automated conversion to optical density (OD)
- stack movie playback
- quantitative component mapping using Singular Value Decomposition (SVD) techniques

This package also contains the GUI stack exploration tool STACKLab. It allows the extraction of average spectra from arbitrary regions of interest (ROI) and the creation of 2 image difference-maps. All results can be exported as figures or text files for further use.

Cite As

Tobias Henn (2024). STXM data analysis script collection - STACKLab (, MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2009a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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Version Published Release Notes

- Minor changes in the documentation
- Fixed layout bug in STACKLab

Small modifications on documentation