KEGGParser: parsing and editing KEGG pathway maps in Matlab

Matlab graph based tool for KEGG pathway parsing, editing, visualization and analysis

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Cite As

Arsen Arakelyan (2026). KEGGParser: parsing and editing KEGG pathway maps in Matlab (https://www.mathworks.com/matlabcentral/fileexchange/37561-keggparser-parsing-and-editing-kegg-pathway-maps-in-matlab), MATLAB Central File Exchange. Retrieved .

General Information

MATLAB Release Compatibility

  • Compatible with any release

Platform Compatibility

  • Windows
  • macOS
  • Linux
Version Published Release Notes Action
1.9.0

1. Minor bugs are fixed.
2. Addition of new pathway to the saved pathway collection
3. Button to delete unconnected nodes.
4. Improved parsing for metabolic pathways (relation attribute based parsing)

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1.8.0

Recent updates
1. kegg_batch.m updated to communicate with the new REST-style version of KEGG API, thus restoring functionality of "Batch Update" option.

2. parse_KEGG_xml.m updated to allow creation of graphs without edges.

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1.7.0

Fixed problem with parsing relations without subtypes. Added automatic correction for protein-compound-protein interactions, group nodes and binding directions.

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1.6.0

Fixes:
1. Fixed problem with parsing relations without subtypes.
2. Added automatic correction for protein-compound-protein interactions, group nodes and binding directions.

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1.5.0

I have found a bug, that results in wrong assignment of interaction types. It is fixed. Scilab version of KEGGParser is also included. Works with Scilab 5.4+metanet

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1.0.0

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