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sigm_fit

version 1.5.0.0 (4.11 KB) by R P
Optimization of parameters of the sigmoid function

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Updated 30 Mar 2016

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Optimization of parameters of the sigmoid function

Syntax:
[param]=sigm_fit(x,y)

that is the same that
[param]=sigm_fit(x,y,[],[],[]) % no fixed_params, automatic initial_params

[param]=sigm_fit(x,y,fixed_params) % automatic initial_params
[param]=sigm_fit(x,y,[],initial_params) % use it when the estimation is poor
[param]=sigm_fit(x,y,fixed_params,initial_params,plot_flag)

param = [min, max, x50, slope]

if fixed_params=[NaN, NaN , NaN , NaN] % or fixed_params=[]
optimization of "min", "max", "x50" and "slope" (default)

if fixed_params=[0, 1 , NaN , NaN]
optimization of x50 and slope of a sigmoid of ranging from 0 to 1


Additional information in the second output, STAT
[param,stat]=sigm_fit(x,y,fixed_params,initial_params,plot_flag)


Example:
%% generate data vectors (x and y)
fsigm = @(param,xval) param(1)+(param(2)-param(1))./(1+10.^((param(3)-xval)*param(4)))
param=[0 1 5 1]; % "min", "max", "x50", "slope"
x=0:0.1:10;
y=fsigm(param,x) + 0.1*randn(size(x));

%% standard parameter estimation
[estimated_params]=sigm_fit(x,y)

%% parameter estimation with forced 0.5 fixed min
[estimated_params]=sigm_fit(x,y,[0.5 NaN NaN NaN])

%% parameter estimation without plotting
[estimated_params]=sigm_fit(x,y,[],[],0)

Cite As

R P (2021). sigm_fit (https://www.mathworks.com/matlabcentral/fileexchange/42641-sigm_fit), MATLAB Central File Exchange. Retrieved .

Comments and Ratings (25)

Nicola Rossi

Works perfectly and the instructions are clear.

Jie Wang

Patrick Palmerini

Sebastian Musslick

Oded Scharf

Tatiana Mello

Swati Jain

eva zita patai

Jochem van Kempen

Great function!

Bram Mast

Simon Cropper

GDMFSOB Bloody brilliant! Thank you.

Sam Garrard

Zoe

RJ Ellis

Works right out of the box. Thanks!

Daniel de Malmazet

Arturo Moncada-Torres

Majken Nielsen

Stefanie Heba

Reza

Works as expected!

Andrea Ballabeni

Simple and effective. Similarly to polyfit-polyval, it would be great to include the related sigm_val function, to evaluate the generated sigmoidal curve.

noam josef

tried using the function with my data and the givven example but in both recieved "Undefined function 'sigm_fit' for input arguments of type
'double'."

any thughts about it?

Yongshen

Earl Vickers

This requires a minmax() function - which toolbox is that in?

MATLAB Release Compatibility
Created with R13
Compatible with any release
Platform Compatibility
Windows macOS Linux
Acknowledgements

Inspired by: Sine function fit

Inspired: sigmoid, sigm_fit_val(param,x)

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