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An online algorithm for R, S and T wave detection

version 2.0.0.0 (128 KB) by Hooman Sedghamiz
Detects the Q, R and S wave and calculates the heart rate, determines two types of arythmia

37 Downloads

Updated 03 Jul 2018

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%% Online Adaptive QRS detector
Description::
QRS detection,Detects Q , R and S waves:
Method ::
Uses the state-machine logic to determine different peaks in an ECG based on averaging and adaptive thresholds which are fluctuating in respect to the noise and the signal. It has the ability to confront noise by high pass filtering and baseline wander by low pass.
% The code is written in a way for future online implementation.
Inputs::
% ecg : raw ecg vector
% fs : sampling frequency
% view : display span of the signal e.g. 8 seconds
%% Outputs
% indexes and amplitudes of R_i, R_amp, etc
% heart_rate computed heart rate
% buffer_plot : processed signal
%% how to use
% for example after loading the ecg mat files in matlab call the
% function as below ;
% [R_i,R_amp,S_i,S_amp,T_i,T_amp]=peakdetect(EKG1,250,10);
%% Author : Hooman Sedghamiz contact :hoose792@student.liu.se , hooman650@yahoo.com
% Dont forget to reference if you found this script useful. I plan to improve the algorithm in the near future when I get some free time :) . It is quite simple now.
%% for referencing
Sedghamiz. H, "An online algorithm for R, S and T wave detection". September 2013. Link:
https://www.researchgate.net/publication/316960619_An_online_algorithm_for_R_S_and_T_wave_detection

Comments and Ratings (50)

I currently recommend to use the following toolbox that I have recently developed, it contains several QRS, P and T wave detection algorithms and very easy to use:
https://www.mathworks.com/matlabcentral/fileexchange/67805-biosigkit-a-toolkit-for-bio-signal-analysis

Paramonte

Hi I think this algorithm will fail in ECG´s whose qrs frequency band is much higher then the T wave one. The initial preprocessing filter 0.5 to 45 Hz is too hard on the qrs for many ecg´s, meaning that T waves will output with peaks values higher then the R waves, and this will make the algorithm detect T waves peaks as R waves, and P waves as T waves

@Matthew I suggest that you watch this video first to learn how you can design a real time application (https://www.mathworks.com/videos/designing-and-implementing-real-time-signal-processing-systems-1502972724722.html). The code here is almost ready to be used in a real time application, but you need to slightly modify it. The main loop in the code begins at line "104" , that is the place where the script reads-in the signal sample by sample and process it. You could assume that you are sampling a signal in a for instance buffer and then run this loop on that buffer. Therefore every real-time application has a small latency. Hope this helps. Good luck!

@Hooman Thank you for sharing this. I would like to use this code for an online application. I am quite new to MATLAB what is the best way to structure the incoming data. Do I stream it in to a vector a certain number of spaces long and then run your function in a loop so that it studies a certain number of signal points in a certain vector first then moves on to the next vector? Could you please give a short explain how you see this running in an online application? Thankyou in advance

For more algorithms in regards to ECG analysis and QRS and T wave detection, see my recent submission BioSigKit:
https://www.mathworks.com/matlabcentral/fileexchange/67805-biosigkit-a-toolkit-for-bio-signal-analysis?s_tid=prof_contriblnk

Jw Yang

Jewel

Why the initial value of weight is chosen as 1.8? Thank you in advance for your explanation

Your code is really helping me a lot in my peak detection and I will make sure I cite it properly. I wanted to know if there is a paper I can read for this particular algorithm and if you have worked on a modified Hamilton-Tompkins. Am struggling on deciding which one is better.

Hello Sir, your code was extremely helpful. Thank you for sharing it. Can you please share the algorithm or the reference paper for better understanding? it will be a great help. Thank you

ale ale

hello Mr.Hooman your code works perfectly i just want to thank you for it , i will gladly mention you in my published thesis and add the link of this page, i just want to ask you if you can please send me a descriptive algorithm or an algorithm containing P wave detection ,I am trying to implement it myself yet it didn't go well due of lag of information of the algorithm , hope to hear from you soon .
Thank you for all of your work .

Wenxin Tong

P and Q wave not detected...

Hon Yohanes

Error using cd
Argument must contain a character vector.

im newbie, can you help me?

hello.can we help me on seaching the code matlab of the wiener filter to detect the QRS complex of an ECG

ehsan ullah

Its a good code, i am using it for T wave detection, but it is giving issues with wrong peaks, it gives wrong peaks for TWA challenge data set 2008 on physionet https://www.physionet.org/cgi-bin/atm/ATM

for twa06m,09,21,33,34,50,72,73
moreover it is also changing amplitude of

output signal

Biomed

Did a quick test and first thing, it throw the following error:
=====================
Attempted to access T(0); index must be a positive integer or logical.
Error in peakdetect (line 274)
hold on,scatter(T_i(1:T(end))./fs,T_amp(1:T(end)),'k');
=======================
Commented that section of the code, and ran it again. It is not working correctly. Returns different # of peaks for QRS vs T (i.e. does not detect all of the peaks) while the data I have is a simulation data and pan tompkins algorithm works fine.

Can you present the reference paper. So I can understand the code clearly.

Yvonne none

wondering if i could discuss

SN Kartik

This is not working
[R_i,R_amp,S_i,S_amp,T_i,T_amp]=peakdetect(EKG1,250,10);
??? Error using ==> filtfilt at 75
Data must have length more than 3 times filter order.

Error in ==> peakdetect at 85
ecg = filtfilt(a,b,ecg);

Divya K

I got Thanks. Very good job. But no Q detection. Thank you Sir..

Tham

Hi,i think figure legend should be "'ECG Signal','R wave','S wave','T wave','Q wave','R adaptive thres','Latest S wave','T wave adaptive threshold threshold'", is it?
And, Q wave may not be detected correctly, can you please check it again? It should be a minimum point before R wave. However, the detected Q wave is abit higher than the minimum point. Similar problem for T wave.
p.s. can you please send me an description for your created algorithm? I need to understand all the numbers that you use in the algorithm^^ Thanks.

Tham

This code worked perfectly! Thanks very much for your work.

thanks Mr. , please i need algorithm of this code so that i can understand it.

Shulin Yan

Could you please send you the base paper or description of your algorithm that I can better understand your code?

Usama Munir

Usama Munir

Plz i need algorithm of this code so that i can understand this code and transform it according to my needs.

wenlong

Krivenkoz

What about comparison of your method and methods which are presented on PhysioNet? P.S. Can you send me an an algorithm description please?

@Alexandre Laurin! Before Giving two stars , its better to contact or write a comment first here. The functions provided here as they are you can change it based on your own needs, changing the name of the function for example or whatever but it does what it says! I don't think two stars is a fair rating for a work provided to you for free !

Please do not write 'close all' in your function. Let us manage our figures ourselves.
I think peakdetect is a bad name, as it is specifically meant for ECG.
The function returned both q waves and r waves as R_i, for the ECG here:https://drive.google.com/file/d/0B0oLTmfsFF6sSk5UeFBGTDNPSWc/edit?usp=sharing

@ Hassan write to my email address and I forward you the algorithm.

Thank you for publishing your algorithm implementation. I couldn't find the algorithm description in the zip file. Would you please direct me to the appropriate repository or email it to me. Thank you.

@Marwin, Thanks for the feedback. You are right, there is no Q wave detection in there but I will add it to that as soon as I get some free time ;)

amanita

I think you need to add the option 'valid' when doing convolution

Marwin

Thank you for creating this code, it helps out a lot. However, I noticed that there is no "q-wave" detected. Are you currently working on it or plan to add q-wave detection later?

r wave detection

thanks. EKG1 is the name of an ECG signal in .mat format for testing the script. I just added that file to the zip and you can now also download that example file with the code.

WHat is EKG1 in m file? program doesnt run due to not specifying EKG1. Can You please help me out to solve it? Thanks...wonderful work done by You..

saradha

Sir,can i get your base paper for ecg qrs online detector.

For a robust QRS complex detector which is noise resistant check out my implementation of Pan Tompkins Algorithm which nicely locates R waves with a high accuracy 99.6% sensitivity.
http://www.mathworks.com/matlabcentral/fileexchange/45840-complete-pan-tompkins-implementation-ecg-qrs-detector

THANK YOU VERY MUCH SIR....

Now the algorithm is also in the zip file for better understanding, it is a simple one though....

zhou renyi

good!

Hi sir,
Thank you for the reply sir, sure sir i will refer your name and also the link of this code in my thesis and also in final ppt.
I am very much thankful to you sir for the paper you are sending to my mail.

Hi Chaitanya,
It is my own made state machine algorithm, its quite simple and is just used a quick solution but I will be improving it to be comparable to Pan-Tompkins algorithm accuray. However, for now it has a much lower latency compared to the Pan Tompkin's. If you want to use it I can send you the algorithm but please refer my name (Hooman Sedghamiz,Linkoping university) and mention the link of this webpage where you took the code.

Good project sir, may i know the link of base paper for this project.

Thanks in advance.

Updates

2.0.0.0

- better preallocation

2.0.0.0

-better preallocation

1.9.0.0

- Cleaned up the code
- Improved efficiency

1.8.0.0

References Updated!

1.8.0.0

Now, the function returns the Q wave index and amplitude too. I try to add the P wave detection scheme soon to the code.

1.7.0.0

error in plot solved.

1.6.0.0

the sample ECG file for testing the algorithm added

1.5.0.0

description added

1.4.0.0

Plots enhanced and adaptive thresholds are now nicely plotted

1.3.0.0

Algorithm Description added.

1.2.0.0

The algorithm description is added to the file for better understanding and some bugs resolved.

1.1.0.0

Some bugs removed and plots enhanced. The function is going to be enhanced in future to handle the shifted and elevated ST waves.

MATLAB Release Compatibility
Created with R2012a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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