BioSigKit a toolkit for Bio-Signal analysis
Updated 18 Oct 2018
BioSignal Analysis KitBioSigKit is a set of useful signal processing tools in Matlab that are either developed by me personally or others in different fields of biosignal processing. BioSigKit is a wrapper with a simple visual interface that gathers this tools under a simple easy to use platform.
ECG QRS detection Algorithms:
1- Pan Tompkins
2- Phase Space Construction
3- Realtime QRST
4- Multivalued Teager Energy Operator
5- Multiscale Peakdetector
6- Filter Bank
3 Channel Accelerometer:
1- Activity Detection
2- Respiratory signal reconstruction
1- Hjorth Parameters
1- ECG derived respiration based on realtime PCA construction
2- Real time adaptive filtering and motion reduction
SEE https://github.com/hooman650/BioSigKit for a complete list!
BioSigKit's goal is to create an open source platform and umbrella for the implementation and analysis of useful signal processing algorithms. All of it's subroutines are implemented in pure MatLab script for the educational purposes even the most popular algorithms such as (Pan-Tompkins).
The ultimate goal of BioSigKit is not to be only used for ECG processing, it aims to be helpful in analysis of several different physiological signals such as EMG, ACC and EDR as well. For instance the last subroutine which is a general peak detector can already be used in many different signals even with low frequencies (Please see the paper by Scholkmann). BioSigKit offers other subroutines for ECG-derived respiration computation, real time multi-channel and single channel Foetal ECG extraction based on non-linear filtering and neural PCA. BioSigKit also offers Psuedo-correlation template matching which has proven to be more accurate for locating MUAPs in EMG signals (EMG toolbox (offered by the same author)). Futhermore, several more subroutines enable the user to estimate the posture of the subject from 3 channel ACC recordings, as well as ACC-derived respiration estimation. Please see the cheatSheet.pdf for the list of all methods provided by BioSigKit.
Sedghamiz, (2018). BioSigKit: A Matlab Toolbox and Interface for Analysis of BioSignals. Journal of Open Source Software, 3(30), 671, https://doi.org/10.21105/joss.00671
MATLAB Release Compatibility
Platform CompatibilityWindows macOS Linux
Inspired by: An online algorithm for R, S and T wave detection, Complete Pan Tompkins Implementation ECG QRS detector, Automatic activity detection in noisy signals with Hilbert transfrom, Toolbox for unsupervised classification of MUAPs and action potentials in EMG
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