Automated phenotyping of mouse behavior

Version 1.1.0.0 (734 KB) by Tapan

Automated analysis of common behavior tasks used by the neuroscience community

1.1K Downloads

Updated 23 Nov 2014

This work includes automated routines for the analysis of several commonly used behavior tasks used by the neuroscience community. We automated the scoring of: Barnes Maze, Social interaction, spatial object recognition, fear conditioning, zero maze, y-maze, open field, and morris water maze.
Please visit www.seas.upenn.edu/~molneuro/autotyping.html for more information.

Cite As

Tapan (2026). Automated phenotyping of mouse behavior (https://www.mathworks.com/matlabcentral/fileexchange/48332-automated-phenotyping-of-mouse-behavior), MATLAB Central File Exchange. Retrieved January 8, 2026.

MATLAB Release Compatibility

Created with R2013a

Compatible with any release

Platform Compatibility

Windows macOS Linux

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Acknowledgements

Inspired by: inpaint_nans, freezeColors / unfreezeColors, mmread, PARFOR Progress Monitor v2

autotyping14.11 copy/

autotyping14.11 copy/BarnesMaze/

autotyping14.11 copy/FearConditioning/

autotyping14.11 copy/Inpaint_nans/

autotyping14.11 copy/MWM/

autotyping14.11 copy/OF/

autotyping14.11 copy/SOR/

autotyping14.11 copy/SOR3/

autotyping14.11 copy/Social/

autotyping14.11 copy/YMaze/

autotyping14.11 copy/ZeroMaze/

Version	Published	Release Notes
1.1.0.0	23 Nov 2014	Fixed bugs relating to the duration of video processing.	Download
1.0.0.0	2 Nov 2014		Download