Fast adaptive kernel density estimation in one-dimension in one m-file;
Provides optimal accuracy/speed trade-off. To increase speed when dealing with "big data",
simply reduce the "gam" parameter; Typically "gam=n^(1/3)", where "n" is the length of data.
X - data as a 'n' by '1' vector;
grid - (optional) mesh over which density is to be computed;
default mesh uses 2^12 points over range of data;
gam - (optional) cost/accuracy trade-off parameter, where gam<n;
default value is gam=ceil(n^(1/3))+20; larger values
result in better accuracy, but reduce speed;
to speedup the code, use smaller "gam";
pdf - the value of the estimated density at 'grid'
data=[exp(randn(10^3,1))]; % log-normal sample
Note: If you need a very fast estimator use my "kde.m" function.
This routine is more adaptive at the expense of speed. Use "gam" to control a speed/accuracy tradeoff.
Kernel density estimation via diffusion
Z. I. Botev, J. F. Grotowski, and D. P. Kroese (2010)
Annals of Statistics, Volume 38, Number 5, pages 2916-2957.
Zdravko Botev (2022). adaptive kernel density estimation in one-dimension (https://www.mathworks.com/matlabcentral/fileexchange/58309-adaptive-kernel-density-estimation-in-one-dimension), MATLAB Central File Exchange. Retrieved .
MATLAB Release Compatibility
Platform CompatibilityWindows macOS Linux
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!Start Hunting!