i6mA-DNCP

a computational tool for identifying 6mA sites in rice genome

train_positive.txt train_negotive.txt: positive and negative samples of benchmark dataset
DNA properties.xlsx: 15 DNA properties including 12 physical properties and 3 thermodynamic properties
DNCPextraction.m (function): encoding DNA sequences with dinucleotide composition and dinucleotide-based DNA properties
datascale.m (function): scaling DNA features
cvtreebagging.m (function): evaluating prediction model with cross-validation
performance_metrics.m (function): calculating various performance metrics
demo.m: demonstrate how to test i6mA-DNCP with cross-validation method to reproduce the results in the paper
i6mADNCP.m (function): building i6mA-DNCP to identify whether a DNA sequence is 6mA site
demo2.m: demonstrate how to use function "i6mADNCP" to identify the DNA 6mA site from a DNA sequence