version 1.4.21 (4.88 MB) by Caleb Stoltzfus
Multidimensional Analysis Pipeline for Histocytometry (CytoMAP)


Updated 29 Jun 2021

View License

CytoMAP makes advanced data analytic techniques accessible for cell position and phenotype data. The goal is to take established analytical techniques, such as neural network based clustering algorithms, and package them in a user friendly way, allowing researchers to use them to explore complex cellular datasets.
Read about version changes on
For descriptions of functions see
If you run into bugs, or have questions about features; post a question on the Scientific Community Image Forum at:
Be sure to add the cytomap tag to your topic for visibility.

Cite As

Stoltzfus, Caleb R., et al. “CytoMAP: A Spatial Analysis Toolbox Reveals Features of Myeloid Cell Organization in Lymphoid Tissues.” Cell Reports, vol. 31, no. 3, Elsevier BV, Apr. 2020, p. 107523, doi:10.1016/j.celrep.2020.107523.

View more styles
MATLAB Release Compatibility
Created with R2021a
Compatible with any release
Platform Compatibility
Windows macOS Linux

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!