EXTRACT-public

Version 1.3.1 (3.23 MB) by Fatih Dinc
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series
0.0
(0)
187 Downloads
Updated 4 Oct 2024
View License on GitHub

Cite As

EXTRACT is described in two accompanying papers: Dinc & Inan et al., 2024 (https://www.biorxiv.org/content/10.1101/2021.03.24.436279v3.abstract) and Inan et al., 2017 (https://pyramidal.stanford.edu/publications/Inan_NIPS_2017.pdf). Please cite these papers if you use EXTRACT in your own work.

MATLAB Release Compatibility
Created with R2019b
Compatible with any release
Platform Compatibility
Windows macOS Linux
Categories
Find more on Neuromicroscopy in Help Center and MATLAB Answers
Tags Add Tags

EXTRACT

EXTRACT/main_functions/debug_utils

EXTRACT/main_functions/debug_utils/brewermap

EXTRACT/main_functions/helper_functions

EXTRACT/main_functions/solvers/base solvers for multiple cells

EXTRACT/main_functions/solvers/cell finding solvers

EXTRACT/main_functions/solvers/cell refinement + frr solvers

EXTRACT/modules

EXTRACT/summary functions

External algorithms

External algorithms/Template scripts

External algorithms/parfor_progress

External algorithms/progressbar

External algorithms/simulation_utils

Learning-materials/Additional demos/NWB Demos

Learning-materials/Additional demos/Neurofinder_training_0200

Learning-materials/Additional demos/SVD-denoising for low SNR movies

Learning-materials/Additional demos/Simulating movies

Learning-materials/Lecture-Tutorials/Tutorial-1-Starting-code

Learning-materials/Lecture-Tutorials/Tutorial-2-Parallelization

Learning-materials/Lecture-Tutorials/Tutorial-3-Preprocessing

Learning-materials/Lecture-Tutorials/Tutorial-4-Cellfinding

Learning-materials/Lecture-Tutorials/Tutorial-5-Cell-refinement

Learning-materials/Lecture-Tutorials/Tutorial-6-Final-robust-regression

Learning-materials/Lecture-Tutorials/Tutorial-1-Starting-code

Learning-materials/Lecture-Tutorials/Tutorial-2-Parallelization

Learning-materials/Lecture-Tutorials/Tutorial-3-Preprocessing

Learning-materials/Lecture-Tutorials/Tutorial-4-Cellfinding

Learning-materials/Lecture-Tutorials/Tutorial-5-Cell-refinement

Learning-materials/Lecture-Tutorials/Tutorial-6-Final-robust-regression

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
1.3.1

See release notes for this release on GitHub: https://github.com/schnitzer-lab/EXTRACT-public/releases/tag/v1.3.1
1.3.0

See release notes for this release on GitHub: https://github.com/schnitzer-lab/EXTRACT-public/releases/tag/v1.3.0
1.0.0

See Github page
0.7.3

Proper citation added
0.7.2

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.