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Question
how to calculate psi and phi angle for every residue of protein from pdb file
Is it possible to calculate using coordinate values?
6 years ago | 1 answer | 0
1
answerQuestion
I am having calculated angle values of calpha atom .How to plot these angle values in the form of png image as function of every calpha that can be identified by residue sequence index?
P=[X_num([2]),Y_num([2]),Z_num([2])];%Atom number 2 is CAatom Q=[X_num([10]),Y_num([10]),Z_num([10])]; R=[X_num([19]),Y_num([...
6 years ago | 0 answers | 0
0
answersHow to read and extract X Y Z coordinates of pdb file without using pdbstruct and pdbread but using file handling commands?
If there is a values in linear line like X= 27.567 24.789 45.879 27.568 26.897... upto 100 values How to extract or take pa...
7 years ago | 0
How to read and extract X Y Z coordinates of pdb file without using pdbstruct and pdbread but using file handling commands?
CA is calpha atom of a protein.Here I extract coordinates values for all atoms.But I need to calculate angle for all calpha atom...
7 years ago | 0
How to read and extract X Y Z coordinates of pdb file without using pdbstruct and pdbread but using file handling commands?
Thank you so much.I got the coordinate values.How to calculate angle between successive calpha atoms from these values?
7 years ago | 0
How to read and extract X Y Z coordinates of pdb file without using pdbstruct and pdbread but using file handling commands?
I am doing internship.My professor asked me to use file handling commands.After reading a file I have to extract coordinate and ...
7 years ago | 0
Question
How to read and extract X Y Z coordinates of pdb file without using pdbstruct and pdbread but using file handling commands?
pdb='C:\Users\Priya\Documents\MATLAB\1ubq.pdb' fileID=fopen(pdb) x = fileread('C:\Users\Priya\Documents\MATLAB\1ubq.pdb'); x....
7 years ago | 5 answers | 0
