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Last seen: 3 months ago Active since 2023

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unit dimensional analysis problems
hi Arthur Goldsipe I followed your advice to adjust the units, and the good news is that it works through dimensional analysi...

8 months ago | 0

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unit dimensional analysis problems
I am tyring to build a model using irreversible and reversible mass action kinetics (Matlab R2023a). My species units are all in...

8 months ago | 2 answers | 0

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answers

Question


How to simulate multiple doses and generate only one plot?
I want to try many dosages of one species and generate only one plot. So I wonder if simbiology has such a function or if I need...

8 months ago | 3 answers | 0

3

answers

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Dimensional analysis fail for reaction on simbiology
I have already tried adjusting the units of the reactants and parameters, but I still receive an error message. I'm not sure whe...

9 months ago | 1 answer | 0

1

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Question


can simbiology estimate dosage ?
I attempted to simulate RPA reactions and also found the necessary ODEs from papers. However, I couldn't locate the dosages for ...

9 months ago | 1 answer | 0

1

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Question


how can I set the Interval time between each reaction in the simulation
I want to consider the Interval time between each reaction. for example I add A and B into the tube and then wait ten minutes ...

10 months ago | 1 answer | 0

1

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can I directly change the ODE?
I want to ensure that I truly understand how to use Simbiology by reconstructing an old model. I have the diagram, parameters (r...

10 months ago | 2 answers | 0

2

answers

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Can Simbiology simulate one-to-many scenarios?
our design has a reaction containing cDNA and AuNP which has many DNA probes on it. cDNA has many bind sites so two AuNPs maybe ...

10 months ago | 2 answers | 0

2

answers

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initial assignment and repeated assignment problem
How I know that when I need to use initial assignment and repeated assignment ? And what is the purpose of those two tools ? th...

10 months ago | 1 answer | 0

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