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MRI Brain Segmentation

version 1.5.0.1 (2.6 MB) by Robert Bemis
Neuroimaging Case Study for seminars and webinars.
4.4
106 Ratings

84 Downloads

Updated 01 Sep 2016

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This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used for webinars for medical applications broadcast live on May 6, 2004.
This package includes some MATLAB code and an MRI scan series consisting of 60 DICOM images. Note that this code relies on MATLAB Central submissions from others. Detailed references to those sources are included.

Cite As

Robert Bemis (2021). MRI Brain Segmentation (https://www.mathworks.com/matlabcentral/fileexchange/4879-mri-brain-segmentation), MATLAB Central File Exchange. Retrieved .

Comments and Ratings (267)

Amina ELGARNE

Hi, I‘m a medical student and my final exam is a presentation related to segmentation for a brain tumor that I should present the execution code. Could anyone please send me the code? '''''' amina.elgarne@gmail.com '''''' and Thank you

Tuan Tran

Bai Datong

Denise Nagel

Hi, I‘m a medical Student and I Write my Dissertation about hippocampal damages in patients with multiple sclerosis. Could anyone please send me the code? Thank you! denise-nagel@web.de

Rebal Ibrahim

Hi
Im a biomedical engineering student and i really need this code for my project
Can you please send it to my gmail:
Ibrahimrebal2@gmail.com

Aksharan Ganeshan

please send 39. Prostate cancer segmentation based on MRI and PET images in this email id: aksharan.g@somaiya.edu

Ali veli

hello! I'm a student in biomedical engineering, can anyone please send the codes to " armut416@gmail.com " Thanks in advance.

Muskan khetan

Hi!, I am a Mtech Biomedical Engineer, can someone please send me this code. I need it urgently for my final thesis.
bt19m018@smail.iitm.ac.in

Hyunseo Lee

Hi!, I am a biomedical engineering student doing a project on mri image. Could you please send me the code you used in the video?
lee3325@purdue.edu

Thanks!

Nashwa Amin

Hi, Could any one send the code
To my mail 11818476@zju.edu.cn. Thank you.

Laila

Mulu Beka

Hi, I am 5th year biomedical engineering student and I am doing my final year research on'' how to calculate the volume of gray matter and white matter from brain mri image'', So any one could you share to me source codes for this task via 0909mulex@gmail.com please, thank you.

Klaudia Wolczyk-Blaszczuk

Hi,
Can I please get this code to my mail k.wolczyk@onet.pl
it will be highly useful for my research.
Thank you !

J.sravya nandini

Could any one send the code
To my mail ssiyaram0407@gmail.com

Kajimusugura Hoshino

Hello,
Can I please get this code since it will be highly useful for my research.
Thank you sm . !

khoshi3@uic.edu

ami

Laila

Zero

Kelsey Mitchell

Hi, I'm a graduate student requiring code like this for my thesis. Could anyone send it to kmitch20@gmu.edu ? Thank you so much!

ali amroune

Hi, I am an intern in a lab requiring a code like this for MRI visualization. Could anyone please send me the code please to : aliamroune.upmc@gmail.com.

Precious Pearl

Can u pls send me the code to my gmail account pearlmaths97@gmail.com.

Afiq Zulkepli

Hi, I'm a student of Universiti Teknologi Mara Kampus Jasin. Could you send me the code to my email at afiq.zulkepli@gmail.com ?

Thank you.

Hoa Tran

Hi! I'm a student, Can you please send me the code in the video? My email: lienhoa.tran99@gmail.com
Thank you

Simge iltas

Hi! I'm a student, Can you please send me the code in the video? smgeiltas@gmail.com

Nguyen Tri Nguyen

Hi! I am a engineer in bioengineering, could you share me your codes? my email: tringuyenttt@gmail.com

Thanks,

Nguyen

Petter Clemensson

Hi! I am a student at Lund University and have an ongoing project working on describing hippocampal sclerosis in vivo. I think the project could benefit from this. If possible, please share the code to my email: pe8408cl-s@student.lu.se
Best,
Petter C

mohammed muzaffer ali

I am biomedical engineering, working in ksa, I need code for. Dcm("cbct=To stld fo FEA

Eli Lefkowitz

Hi, I am an intern in a lab requiring a code like this for MRI visualization. Could anyone please send me the code to eliglefkowitz@gmail.com?

Harsh Arora

Hi, I am a student studying biomedical imaging, this demo is really helpful, It will be great if you can send me the code.
I request you to please send the code at t18163@students.iitmandi.ac.in

Thanks

Syed Hussain

Hi, I am a student who studies to the brain segmentation, Could you send me the MATLAB code, please ?
if you could send the code please send to syedsajidhussain21@gmail.com

carlotta fontana

hello! I'm a student in biomedical engineering, can anyone please send the codes to cfontana@unisa.it. Thanks in advance

Silvana Q. Alvarez

Hi, I am a student who studies to the brain segmentation, Could you send me the MATLAB code, please ?
if you could send the code please send to emmacharlotte012@gmail.com

Ishi Tandon

Hi,
I am analysis a few MRI datasets and learning to automate its preprocessing steps in MATLAB.
it would be a great help, if you could share the code at - Ishi.tandon99@gmail.com

Cal

Hi, I am an analyst working on Neural Images and found this tutorial. Would it be possible to get your code so I can look into it?
Thank you in advance and my email is
h7song@health.ucsd.edu

Jayashree Murali

Hello, I am a student. I am working on brain tumor segmentation. Could you please send me the code for my project? And I sure this will help my research work. shrihema17@gmail.com

Jean-Philippe Lévesque

Hi, I am a student à Université Laval in Quebec city and i'm working on medical image processing for my master degree. Can someone send me this code to help me in my research -> jean-philippe.levesque.4@ulaval.ca
Thank you :)

Alissa Chaitarvornkit

Hi, I am also a student, if anyone has the code, it would be highly beneficial for my research--> acha0520@uni.sydney.edu.au
Thank you so much in advanced :)

Nathan Bernardo

Hi I'm a student and I am working on medical image processing for a project. Can anyone send this code to nthnb98@gmail.com? Thank you!

Rohan Sri Tej

hello! I'm a student in biomedical engineering. Can anyone please send the code to sritejrohan@gmail.com

sathiya priya

hi I m student. I am working in medical image processing. can anyone send this code to sathu9790@gmail.com

Leyla Sharipova

Can anyone please send to me the segmentation code in this addresse : gilbert.robs@yandex.ru
Thank you.

virgo kk

Hi I'm research scholar. Can anyone send this code?
This code must be useful for me to research.
b15t2018b@edu.tottori-u.ac.jp
Thank you your help

Rahul Sharma

I am research scholar. can anyone send this code it will be useful for me. email ID is sharmarahul.26dec@gmail.com

Chungmin Han

Hello :) I'm a research assistant and was looking for volumetric visualization, would you mind sending me the code?
cmhan616@utexas.edu - appreciate it.

Sophia Nelson

This model is amazing. Im doing a project with the growth of gliomas in the brain and this code would be supper helpful in modeling how brain tumors affect the volume of the brain.
Could I please get the code for snelson11@hawk.iit.edu
thank you so much

meer

can you send me the code syazmeer.sabudn07@s.unikl.edu.my

Eliane Brechbühl

Hi, could you please send me your code? Thank you. eliane.brechbuehl@epfl.ch

Mohammed Otibi

Hi, I am a student of applied mathematics and I working on a medical image processing project.Could you please send me your code to my mail address

Maah44@outlook.com

I appreciate your help .

MUHAMMAD ALKHUDAYDI

yuhan

Hello, I am a student of electrical engineering and I working on a medical image processing project.Could you please send me your code to my mail address?
867243772@qq.com
thanks.

Narosh Shibu Mathew

Could you send me the code so I can study the codes. thank you very much.
naroshshibumathew@gmail.com

Latha Kondameedi

Hey i am a biomedical student.
Can please send me the code.
kondameedimamatha@gmail.com

Sheng-Yao Huang

could you please provide me this code.
thank you.
vic.huang1973@gmail.com

kamal ahmadiyan

Hello, I am a student of electrical engineering and I working on a medical image processing project.Could you please send me your code to my mail address?
kamalahmadiyan1376@gmail.com
thanks.

virgo kk

Hello, I am a student of electrical engineering. I try to use your code for my study of Image processing. So could you send me your code to my mail address??
I really need it. My mail address is B15T2018B@edu.tottori-u.ac.jp

Sofia Ostellino

ahmed nageeb

Hello , i am student , please can you send me your code in the video?? at ahmedmaelesawy@gmail.com

haohaohao-

Hello, I am a student of electrical engineering. I am researching a project on 3D brain printing, which needs to study the part of image segmentation. Would you like to share your code with me? lancelot_hou@outlook.com Thank you.

Oluwatosin Olagbaju

Hello , I am an Imaging and Nuclear Medicine research student and i am working on medical image project . could you please share the codes used in this video with me ?. triplet852002@gmail.com

Lucy Daniela Campos Vega

Hello, I am biomedical student and I working on a medical image project. Could you please send me the code you used in your video?
daniela.95cv@gmail.com

Thanks!

stewart mclennan

Hi, many thanks for the very useful video series. Like everyone else I am also hoping to get a copy of the brainscan.m code (Email: stewart.mclennan@hotmail.co.uk).
Hopefully this is ok.
Best,
Stewart

Zheng Fang

Hi I am biomedical engineering student. Can you please share the source code of brainscan.m to mn18zf@leeds.ac.uk, I really need it for my project.

Arkojyoti Chakraborty

Hi I am biomedical engineering student.can you share the source code of brainscan.m on arko.arsenal@gmail.com

Sebastian Ramirez

hi, i´m student on medical image processing. Could you share the codes on sebastianr2812@gmail.com?.
Thanks

BIANCA DATOLA

Hi, i'm a student working on a medical images project. could you please share the codes on
bianca.datola@gmail.com
thanks so much
bianca

Fatemeh Bashiri

Hi, I am a student working on medical image processing, and I need to segment brain. Could you share the codes on fatemehbashiri2@gmail.com? I'll be thankful <3

YIFEI WU

Hi, I am a student in University of California, and I am working on medical image processing. Could you share the codes on y3wu@eng.ucsd.edu? Thank you so much!

Antonio Fasano

Hi, I am a medical student working on a medical images project. Could you please share the codes on antonio.fasano89@gmail.com?
Many thanks!
Antonio

Shan

Shan

Hi, I am a bioengineering student working on a medial image processing project. Could you please send me the code (BrainScan.m) for reference?
bcjump@aol.com
Thank you!

Xi Chen

Hi
Hi, I am also a student working on medical image processing and image segmentation projects. Could you please send me the code (BrainScan.m) for reference as well? nickchen1996@gmail.com
Thank you so much!

leonardus Sandy

Hi,

The demonstration was really helpful. Could you please share the code on leonardusandy@gmail.com

Many thanks
Sandy

Syed Ahmed Zaidi

Could you please send me the code at legitarmada@gmail.com

Akram Musaad

Hello, i am a student and working on image segmentation project. Can you please send me the code for reference. akam.mu92@gmail.com.
Thanx a lot.

Gimantha Upasena

Hey could you send the code for sliceomatic function. I'm working on image processing as well and this would really benefit.

francesca lima

HI,could you please send the code (BrainScan.m) on francylima94@gmail.com?I'm working on a similar project:)
It would be really helpful, Thank you very much.

saumya singh

plz send the complete code my on my mail
saumyasingh2412@gmail.com

Abuzar Qureshi

PLZ send the complete code on my mail
iphone1612.s@gmail.com
Best Wishes

NAEEM LATHEEF 15BMD0068

Hello sir,
I'm working on a similar project. Since this is my first attempt to this type of project I'm in need of a sample code for reference. Please send me this code at naeemlatheef97@gmail.com.
Thank you!

Helge

Hello,

where can I view the video, or got it removed because it's outdated?

Best wishes

Victor Plaza

Manasa T K

Ramya Sakthivel

Hello sir,
Am working on the project similar to this. And am in need of the sample code for reference since this is my first attempt to thus type of project. Can so please send me this code at ramya050997@gmail.com.
Thank you!

voxey

sliceomatic error , tool is not there , its not working? very bad

mohsin rao

plz send me all code bcz in this code i'm facing the errors plz send the all cods on
mohsinrao1516@gmail.com

. .

HI,could u please send the code on sprahul.kumar@gmail.com.com
It would be really helpful, Thank you very much.

nder

hello..im a student and its new thing for me to work on medical image..can you send the code to my email please....nderek88@gmail.com thank you very much...

Ahmed Al-Hami

Hello
I am medical student. Can you please send the code to my email
alhamiahmad@stud.uni-obuda.hu
Thank you very much.

ebrahim senan

Could you send me the code so I can study the codes. thank you very much.
senan1710@gmail.com

mohammad sadegh ahmadzadeh

can you send me the code so I can study the codes. thank you very much.
mohammad.s.ahmadzadeh@gmail.com

Abhinav Mishra

Could u please send the code on abimishra98@gmail.com
It would be really helpful, Thank you very much.

Adam Golightly

Could you send the code to highonflying36@gmail.com

Thank you very much!

md sohel Rana

Could you please send me the code to 1551986795@qq.com

Thanks in advance!

Max

Hi,

The demonstration was really helpful. Could you please share the code on chamoxe@hotmail.fr

Many thanks
Matthieu

Ivan Krstanovic

Thank you for helping me learn image processing... I'm having some trouble with the code. Could you send me the code to noobprogramer@yahoo.com

Thank you again and have a nice day.

man-chen huang

Could you please send the code to jenny22930794@gmail.com
thank you!

Denver IPT

Could you please send me the code to nlevelset@gmail.com

Thanks in advance!

Naveen R

please send the code
rnaveen8991@gmail.com

Sandra Banda

I loved the video.
Kindly send me the code for the example to my email: nagawabanda@gmail.com

Hassan R

free.psk@gmail.com

prathibha g

kindly send me the code to drgururajahebbar@gmail.com

mehak aggarwal

I appreciate it if you send me the code to mehakaggarwal106@roocketmail.com

Yair Goldfarb

I appreciate it if you send me the code to yairgold@yahoo.com, thanks and all the best.

Carlos Caldera

appreciate it if you send me the code npq988@my.utsa.edu or cjacobcaldera@gmail.com

Mahsa Tajdari

I appreciate if you send me the code at mahsa.tajdari91@gmail.com

muhaimin mahfudz

greetings, appreciate to send me the code at mexicanthugz@gmail.com. currently an undergrad student segmenting brain mri

Shawn Wu

I appreciate if you send me the code.--shengywu58@gmail.com

APS

Hello please send me the code to my email please.
amalsnair34@gmail.com

sheetal wadhai

Hello
Please send me the code to my email please.
sheetalwadhai05@gmail.com

Kifra Franckie

Hello ... I appreciate a lot your demonstration.... Would you please send me the code to fkifra@gmail.com

Lenin Pañi Panama

hello, send me code to email, please
thanks
leninr.panip@ucuenca.edu.ec

Usama Adil

Hello
Send me code to email please
Thanks
usamabuz@gmail.com

Yong Min Lee

Please help!!!!!
adsqz12@naver.com

SHIVA SHANTHI NAREDDY

shivanichinni1997@gmail.com

Stamatis Vroutsis

Hello! your video was very helpful! I want to make a project, can you please send the hole code of BrainScan.m?: stam_v@yahoo.gr
Thank you in advance

Akash Gupta

Hi,

The demonstration was really helpful. Could you please share the code on 517207@swansea.ac.uk

Many thanks
Akash

Friedman MAHARILAZA

Hello everyone!
How to select one image on montage and choose between the multiple images to select, please?It's my problem now!
Please send me the code to my email please. Thanks.
friedman.maharilaza@gmail.com

Javaid Iqbal

Hello
Please send me the code to my email please. Thanks.
javaid.ciit@gmail.com

gizem tak

hey there hello
Is there anyone that can help for mr brain extraction for tumor with watershed algorthm segmentation in matlab please

abang mohd

Hi there, Can you please send me the code for my research references. Your cooperation is highly appreciated. You can send the example through my email. abganaqi2@gmail.com

EWERTON PACHECO DE SOUZA

Hi... it´s a helluva tool. Can you please send me the code? Thank you very much.

ewerton.ene@gmail.com

NAEEM LATHEEF 15BMD0068

Please send me the code to my email please. Thanks.
naeemlatheef619@gmail.com

Kaveh Laksari

Hello, is there a way to download the .m files? Thanks

Muhammad Usman

this is very helpful please send be code to my email

14ect34@gmail.com

thanku very much

SUNG WON KIM

Hello
I am medical student. Can you please send the code to my email?
trevoriu2582@yonsei.ac.kr
Thank you very much.

Tal Goldfryd

Hi
Can you please sende the code to my email. It will be very helpful or my project
talgold9@gmail.com
Thanks alot

Mahdi Ali Warsame

could you please provide me this code.
thank you.
mahdi.abdulle@ogr.sakarya.edu.tr

Sruthi Saradha Srinivasan

Hi! It would be really helpful for my project if you could email me the code for reference : sruthisrinivasan94@gmail.com .
Thanks !

Sathyathas Puvanasunthararajah

Please Could you mail me the MATLAB code for brain segmentation using MRI image to pthas88@gmail.com

Muhd Harith Mohd Johan

Hello i am student need to have coding for my assignment. Please email to me at muhdharithmohdjohan@gmail.com.

fwteinh zosimidou

Could you please provide me with the code?
fwteinhzosimidou@gmail.com

Laila

Could you please provide me with the code?
umisraa20@gmail.com

Hussen Alwazne

Jasvir Bahl

Great video but would I please be able to get the code? I am a PhD student in Australia. jasvir.bahl@gmail.com

Jasvir Bahl

Great video but would I please be able to get the code? I am a PhD student in Australia

Tawhidur Rahman

just running the project in matlab will be enough to get pass with project ?everyone ?

divya sirigineedi

hi sir,iam graduate of the department of ECE at RGUKT nuzvid, i want to do project based on brain tumour segementation using MRI images .so i want code for that .will u plz send it to my mail.i will be thankfull to u sir

xu shuai

Hi sir，I am a graduate of the Department of Mathematics at Shanghai University ，I am learning medical image segmentation using Matlab. could you please send me your code my e-mail is Xs_222222@shu.edu.cn

Ashlyn Aiello

Hi. Would it be possible to get the code you used in the video? I'm working on a project at BU that uses similar analysis of large series of medical images. Thanks.
ajma@bu.edu

Edgar Villagran

I would like too much to receive the code you use in the video. I want to use it for teaching purposes in Biomedical Engineering and of course the citations and aknowledgmnts to you all the time will be provided. villagran.e@gmail.com

Jahanzeb Saqib

Mingyang Wang

Hello, currently studying this video as a part of a research project, Could you please send me the code you used in your video?
happymingyang@gmail.com

Thanks!

Elliott Fullerton

Hello, Looking into MRI as part of a PhD project. Could you please send me your code from the video. e.fullerton@lboro.ac.uk
Kind Regards
Elliott

islam abdelhamid

could you please send me your code my e-mail is iabdelhamid3@gmail.com

Sue123

Hello,
I downloaded code but it is not working. I had error code this :
Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
I need help you. Thank you more much!
My email id is:971183504@qq.com

Shujin Zhu

Hi sir, this case seems useful to me, it will be great if you could share the code with me s66zhu@uwaterloo.ca . Much appreciated!

Srinivas Saripalle

Hi, I am learning medical image segmentation using Matlab. Can you please send the package of the project. My email is: ssaripalle@gmail.com

Thanks
Sri

Tony Kong

Hi, I'm a computer science master student at Northeastern University. Could you please send me the package of the project? My email is kong.zhe@husky.neu.edu Thank you very much

Courtney Nelson

Hi, I'm a biomedical engineering student at The Catholic University of America and I'm working on a project to analyze the gray versus white matter. could you please email me codes or advice to 83nelson@cua.edu

Thank you!

Lorenzo Valente

Hi, I'm a computer science student of the 'University of Salerno and I'm writing a thesis on the MRI images. Could you please send me the whole package of the project?

Thank you!
email: valentelorenzo@live.it

Christopher Rahimi

Hello,

I'm trying to estimate ventricle volume in the brain using matlab. Can you please email me codes and any advice you may have @ ckrahimi18@gmail.com

Thank You

reham targam

Hi Sir, can you email me the code for my project reference? Email to reham.targam@gmail.com

swarada kanap

need coding on image segmentation and morphological operators on brain tumor images
yash.hajare29@gmail.com

Aliatabassum Abdulsalam

How to extract tumor after fuzzy c-mean segmentation applied on MRI brain images

wu w

if it is possible could you please send me your code my e-mail is : wemx50029@yahoo.com.tw

Elif Akcay

if it si possible could you please send me your code my e-mail is : eliftugbaakcay@gmail.com

sam CP

I want to remove skull from brain using morphological operations and thresholding.. i have wrote the following code ,but i didn't get skull stripped MRI..Please guide me..

clear all; clc [filename pathname] = uigetfile({'*.jpg';'*.bmp'},'Select MRI'); inputimage=strcat(pathname, filename); I = imread(inputimage);

figure,imshow(I), title('input');

se = strel('disk',7);

closeBW = imclose(I,se); figure, imshow(closeBW);title('close operation');

afterOpening = imopen(closeBW,se); figure, imshow(afterOpening,[]);title('open operation');

J=I-afterOpening; figure, imshow(J,[]);title('Skull of MRI');

K=I-J; figure, imshow(K,[]);title('Skull removed MRI');

sai govind

could you please provide me this code.
thank you.
govind.sai62@gmail.com

Jessica Xian

Hello,
Would it be possible to send the coding to my email: zcqsjxi@ucl.ac.uk
Thank you!

Hai Nguyen

need coding on image segmentation
Email: thanhhai7486@gmail.com
Thanks very much

Preeti Sharma

need coding on image segmentation

Arjun KV

could you mail me the code for the same.
arjungopinath310@gmail.com

shabaz khan

sir, iam a PG student doing project on the mri brain white matter segmentation.Will you please help me to get the database for the same . My mail id is shabazkhanbme15@gmail.com

Henry Ortega

Hello, I am not sure how this comment section works, but could you send me this code about segmentation? Thank you in advance.

hortega@fisica.edu.uy

Jash Bhayani

Hi, Could you please email the code for the same? Thanks!
email id: jashbhayani18@gmail.com

Jash Bhayani

Hi, Could you please email the for the same? Thanks!
email id: jashbhayani18@gmail.com

Tran Thai Son

hello sir , can you email me the code at
tranthaison226@gmail.com ?
I need it to make segmentation for the brain image
it very imp so please send the code

thank you very much!!

Seung Yong Lee

hello sir , can you email me the code at
lsy920607@naver.com ?
I need it to make segmentation for the brain image
it very imp so please send the code

thank you very much!!

Seung Yong Lee

Sae Bom Lee

Hello, I need this code for my project.
Can you send me this code about MRI Brain segment?
Please send email me.

My email is newspg93@gmail.com

Thank you.

Bala Subramaniam

Could you please share the codes for this topic ??Thanks in advance
Mail id : bsubramaniam11@gmail.com

Soo Jong Kim

In Medical Image Processing with MATLAB
Can you send me his code in that lecture?
please I need it..
My email is ksj9108@naver.com

thank you

faisal aziz

can any one send me the algorithm for 3d reconstruction from segmented mri 2d slices in matlab????

Yameng Liu

My email is yameng.liu@duke.edu

Yameng Liu

Hello I am a graduate student working on medical image segmentation. Can you share me the codes?
Thanks

fatma

Hello,

I downloaded code but it is not working. I had error code this :

Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

I need help you. Thank you very much!
email :fatmademirezen@gmail.com

reshma hiralal

hello sir,
i am a pg student working in image processing, i am working on MRI brain image segmentation. can u share me the codes. as the downloaded code is not working.
mail id: reshma.hiralal@hotmail.com

Wenjun Wu

Hello,

Can you email me the code at wuwenjun1995@gmail.com?

Thank you very much!

@MSM

hello sir , can you email me the code at
masusm89@hotmail.com
I need it to make segmentation for the brain image

thank you very much

Hong Shan Lim

Hi Sir, can you email me the code for my project reference? Email to hslim013@unisim.edu.sg

Thanks

saladi saritha

can you please provide me the code for my study project? my email id: saritha.saladi3188@gmail.com

Adnan

Will you please send me the code for study purpose?

My email is write2adnanalamkhan(at the rate)gmail.com

fateen nur nadhira

can you send the code to me please? fateennad94@gmail.com

fateen nur nadhira

can you sens the codes to me, i need to do brain segmentation for alzheimer disease

Cixian Lu

aalishan ali

can you send me the code please ? aalishan0806425@gmail.com

sheetal wadhai

Could you send me the code please?
it very imp so please send the code
sheetalwadhai05@gmail.com

Mac

Could you send me the code please?
mrungta13@gmail.com
Thanks!

orchis_2005

Can I get the codes please?
Thanks!

shaheen kanwal

could you send me the code please ?
shaheenkanwal1995@gmail,com
Thanks :)

AKS

Can I get the codes please?
Thanks!

Maria Kline

I would like to do something similar, except with a knee MRI, very fascinated by this could you please send me it at maria.kline@yahoo.com

mima zebouchi

i wont to segmentation of whitematter and gray matter

hmmmmm

my project is brain MRI segmentation and 3D reconstruction ...
can you please send to me segmentation code in this address zameerabbas72@gmail.com

mima zebouchi

sr i have a problem:?? Error using ==> lt
Matrix dimensions must agree.

Error in ==> brainscan2 at 116
mriBrainPartition=(mriAdjust < level & mriAdjust>= 0)==2;%2=graymatter

>>

mima zebouchi

my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse :
mimazebouchi@gmail.com

Sheena Ratnam Priya

could you please help me on tumor extraction and area calculation?
sheenasandie1794@gmail.com

merve acar

Thnak you Sir for the nice work !
my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : merve.acar@atauni.edu.tr

thnak you in advance !
Regards

Feten

It's OK the problem is fixed. After mading modification described on
http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic#comments
I restart the matlab and it 's working.

Feten

I am using matlab on Linux.

Could you help me to fix this problem:
Reference to non-existent field 'toolbar'.
Even after trying the fix described on 'http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic'

Traceback of error:
Error in figmenus>OverrideStickyUserPreferences (line 449)
set(d.toolbar,'visible',prefs.anntoolbar_Checked)

Error in figmenus (line 105)
d = OverrideStickyUserPreferences(d);

Error in sliceomaticfigure (line 136)
d = figmenus(d);

Error in sliceomatic (line 203)
d = sliceomaticfigure(d);

Error in analyze_series8 (line 68)
sliceomatic(double(D))
By 'Justas Bezaras'

Ayani Kapugama Arachchi

Hi..
I got these errors while running the sample

Error in ==> imtool at 173
if ~internal.images.isFigureAvailable()

??? Output argument "hout" (and maybe others) not assigned during call to
"C:\Users\nethma\Desktop\MATLAB\R2011a\toolbox\images\imuitools\imtool.m>imtool".

Error in ==> imview at 18
hh = imtool(varargin{:});

Error in ==> analyze_series8 at 55
imview close all

Please Help me, HOW TO RESOLVE THIS ERROR??

AZama

I am using .dcm files of 512x512 size, i am getting an error
voxel_size =

0.4492 0.4492 5.0000

Name Size Bytes Class Attributes

D 512x512x2 1048576 uint16

Index exceeds matrix dimensions.

Error in analyze_series8 (line 49)
im = squeeze(D(:,:,i));
PLEASE HELP ME, how to resolve this error

Ganesh Raut

Manu BN

sdh32

To fix the error:

Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');

Get the function vline from:

http://www.mathworks.com/matlabcentral/fileexchange/1039-hline-and-vline

To fix the error

Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

change the instances of imview to imtool in analyze_series8.

iza

Help me solve this error...

Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');

Peng Dai

great tools, it's based on old version of Matlab. have to make a little change to run on version2012

Hieu Lam

hi, i am using matlab R2012b and they have the error:
Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

How to fix it? thanks

Xinzhou

Hello, I am student learning medical image processing by applying matlab. When I use the function "threshold_tool' in this folder. It shows function 'vline' not defined. Is there any way can solve this problem. Thank you so much.

shruti

Sir,I am searching for segmentation of gray matter from T1 weigheted brain MR images.Can u plz send me the code to this address.
My id:shruti.gubbi77@gmail.com

sp 2013

Sir, pls give me the matlab code for whitematter sementation from mr images my mail id is :adish321309@gmail.com

sp 2013

sp 2013

Sir,I am searching for segmenting white matter from a T2 weighted brain MRI scan. But I could not get the correct tutorial to follow it. Please suggest me an algorithm that works better and accurately to segment the gray matter alone from the T2 wieghted MRI scan image my mail id is:adish321309@gmail.com

sp 2013

Sir i'm a student and my project is mild brain injury detection
Can you please send to me the segmentation code in this addresse : adish321309@gmail.com

sp 2013

sir, iam a PG student doing project on the mild brain injury detection.Will you please help me to get the database(t2 weighted mri of mild brain injured images) for the same . My mail id is adish321309@gmail.com

NTUT

Hello Sir, I am PhD student of National Taipei University of Technology. i doing a project in dementia with MRI brain images using freesurfer and Matlab software. can you please tell me how to run new subject of images in Matlab. thank you! My email id is: avichandra0420@gmail.com

majid SHOKRI

sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is majidshokri_boj@yahoo.com

redouan pitrochka

Thnak you Sir for the nice work !
Please i'm a student and my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : redouan_lahmyed@live.fr
thnak you in advance !
Regards

soniya joy

Aysha

sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is jasaem.21@gmail.com

Fatemeh

If you want to download this useful package, click on download submission button, http://www.mathworks.com/matlabcentral/fx_files/4879/6/MRI_Brain_Scan.zip

haribabu

how to download this package..
please help me...

Hg

devabhaktuni phaneendrababu

Can you please help me how to download this file

SIVA

its very use ful ,,,.

naila

I couldn't able to download the code. please can any one help me?

elise lau

I'm new to matlab, doing segmentation of brain tumor from 2D MRI images for my project. anyone have the coding? can help me?thx very much..

yuvaranjini

Really good work sir. It would be nice if you add some description to the code.
It helps me a lot

mariam

dear All, would you please guide me how I can 1/8 of volume image I mean I can reconstruct the volume image but I do not know how to extract for example 90 degree volume slice of it. I appreciate your help

priya dharsini

good work sir. iam a PG student doing project on the same. I dont know how to split white matter from a brain MRI image using matlab.Will you please help me. My mail id is dharsiniece@gmail.com

manoj

high to all........actually i am beginner in image segmentation could anybody help me

my email id is manoj4736@gmail.com

thanks

porngamol sitlaothaworn

it helps me in senior project :)

Nurhasanah Ivansyah

it's very good tutorial. Very good coding for matlap brain image processing.
but can you help how to segmenting brain white matter, gray matter and cerebrospinal fluid. if you have algoritm or code in matlab, help give me.
i really need....

Dr. Deepak Kumar Rout

Robert Bemis

Note for users who get stuck by the IMVIEW error. That function was replaced by IMTOOL (years ago). In analyze_series8.m just replace all occurrences of "imview" with "imtool" (and save).

See also
>> doc imview

Preeti

i am getting the error in imtool and not able to remove even downloading the patch as advised. please help.

sheldon

your work is good. it is helping me a lot. but i am facing a small problem if i give input(dcm files) of larger size like 138 kb other than that you used is 129 kb. please help me out with this. i am using matlab r2008a. i get the error;

voxel_size =

0.9375 0.9375 6.0000

Name Size Bytes Class Attributes

D 256x256x12 1572864 uint16

??? Index exceeds matrix dimensions.

Error in ==> analyze_series8 at 43
im = squeeze(D(:,:,i));

after the dicom files stored are read.

Nandan S

shokrollah derafsh

Fazl-e- wahab

mahima bansal

Make it more explanatory. so that it could be efficient for a beginner.

sajal chirvi

rohit garg

i wanted a code for segmentation of brain tumor from 2D MRI images.

nandy kidd

getting the following error in R2007

??? Output argument "hout" (and maybe others) not assigned during call to "C:\Program Files\MATLAB\R2007a\toolbox\images\imuitools\imtool.m (imtool)".

Error in ==> imtool at 155
close_all = nargin == 2 && ischar(varargin{1}) && ischar(varargin{2}) && ...

Error in ==> imview at 18
hh = imtool(varargin{:});

Error in ==> analyze_series8 at 53
imview close all

FABIAN FORERO

me sirve para el trabajo de grado

mitali lembhe

Dheeraj Chahal

Excellent code

basil abu-hijleh

Very good coding for matlap brain image processing

Jau-Jie You

Good tutorial.

chethana s s

matlab codeing on brain image segmentation

Joseph Paul

l smith

very good!

Roman Rodionov

Excellent presentation as an introductory talk for those who start MRI analysis with MATLAB.
Thank you very much!

aftab muhammad

no

Muhammad altaf

help ful for the study of MRI
I am in search for xray enhancement

Mohammad Ahmad

Jiang Yun

It's helpful for my study in medical imaging. I've not been kowning that MATLAB could also deal with the DICOM files.

Sanaz negahbani

program with Matlab software for leaf classification & image segmentation
thanks alot

PAN QF

hamid reza imani

bahare vafadar

George Theofilogiannakos

ee fzaf

S.Ravikumar sampathkumar

zj zhao

ww

yd ccec

good ,i like it

roopa m

wenshu lee

it can help the students interested in the image processing.

MATLAB Release Compatibility
Created with R14
Compatible with any release
Platform Compatibility
Windows macOS Linux
Acknowledgements

Inspired by: Sliceomatic, hline and vline

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