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MRI Brain Segmentation

version 1.5.0.1 (2.6 MB) by Robert Bemis

Robert Bemis (view profile)
Neuroimaging Case Study for seminars and webinars.
4.4
99 Ratings

105 Downloads

Updated 01 Sep 2016

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This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used for webinars for medical applications broadcast live on May 6, 2004.
This package includes some MATLAB code and an MRI scan series consisting of 60 DICOM images. Note that this code relies on MATLAB Central submissions from others. Detailed references to those sources are included.

Cite As

Robert Bemis (2020). MRI Brain Segmentation (https://www.mathworks.com/matlabcentral/fileexchange/4879-mri-brain-segmentation), MATLAB Central File Exchange. Retrieved .

Comments and Ratings (248)

Precious Pearl

Precious Pearl (view profile)

Can u pls send me the code to my gmail account pearlmaths97@gmail.com.

Afiq Zulkepli

Afiq Zulkepli (view profile)

Hi, I'm a student of Universiti Teknologi Mara Kampus Jasin. Could you send me the code to my email at afiq.zulkepli@gmail.com ?

Thank you.

Hoa Tran

Hoa Tran (view profile)

Hi! I'm a student, Can you please send me the code in the video? My email: lienhoa.tran99@gmail.com
Thank you

Simge ILTAS

Simge ILTAS (view profile)

Hi! I'm a student, Can you please send me the code in the video? smgeiltas@gmail.com

Nguyen Tri Nguyen

Nguyen Tri Nguyen (view profile)

Hi! I am a engineer in bioengineering, could you share me your codes? my email: tringuyenttt@gmail.com

Thanks,

Nguyen

Petter Clemensson

Petter Clemensson (view profile)

Hi! I am a student at Lund University and have an ongoing project working on describing hippocampal sclerosis in vivo. I think the project could benefit from this. If possible, please share the code to my email: pe8408cl-s@student.lu.se
Best,
Petter C

mohammed muzaffer ali

mohammed muzaffer ali (view profile)

I am biomedical engineering, working in ksa, I need code for. Dcm("cbct=To stld fo FEA

Eli Lefkowitz

Eli Lefkowitz (view profile)

Hi, I am an intern in a lab requiring a code like this for MRI visualization. Could anyone please send me the code to eliglefkowitz@gmail.com?

Harsh Arora

Harsh Arora (view profile)

Hi, I am a student studying biomedical imaging, this demo is really helpful, It will be great if you can send me the code.
I request you to please send the code at t18163@students.iitmandi.ac.in

Thanks

Syed Hussain

Syed Hussain (view profile)

Hi, I am a student who studies to the brain segmentation, Could you send me the MATLAB code, please ?
if you could send the code please send to syedsajidhussain21@gmail.com

carlotta fontana

carlotta fontana (view profile)

hello! I'm a student in biomedical engineering, can anyone please send the codes to cfontana@unisa.it. Thanks in advance

Silvana Q. Alvarez

Silvana Q. Alvarez (view profile)

Hi, I am a student who studies to the brain segmentation, Could you send me the MATLAB code, please ?
if you could send the code please send to emmacharlotte012@gmail.com

Ishi Tandon

Ishi Tandon (view profile)

Hi,
I am analysis a few MRI datasets and learning to automate its preprocessing steps in MATLAB.
it would be a great help, if you could share the code at - Ishi.tandon99@gmail.com

Cal

Cal (view profile)

Hi, I am an analyst working on Neural Images and found this tutorial. Would it be possible to get your code so I can look into it?
Thank you in advance and my email is
h7song@health.ucsd.edu

Jayashree Murali

Jayashree Murali (view profile)

Hello, I am a student. I am working on brain tumor segmentation. Could you please send me the code for my project? And I sure this will help my research work. shrihema17@gmail.com

Jean-Philippe Lévesque

Jean-Philippe Lévesque (view profile)

Hi, I am a student à Université Laval in Quebec city and i'm working on medical image processing for my master degree. Can someone send me this code to help me in my research -> jean-philippe.levesque.4@ulaval.ca
Thank you :)

Alissa Chaitarvornkit

Alissa Chaitarvornkit (view profile)

Hi, I am also a student, if anyone has the code, it would be highly beneficial for my research--> acha0520@uni.sydney.edu.au
Thank you so much in advanced :)

Nathan Bernardo

Nathan Bernardo (view profile)

Hi I'm a student and I am working on medical image processing for a project. Can anyone send this code to nthnb98@gmail.com? Thank you!

Rohan Sri Tej

Rohan Sri Tej (view profile)

hello! I'm a student in biomedical engineering. Can anyone please send the code to sritejrohan@gmail.com

sathiya priya

sathiya priya (view profile)

hi I m student. I am working in medical image processing. can anyone send this code to sathu9790@gmail.com

Leyla Sharipova

Leyla Sharipova (view profile)

Can anyone please send to me the segmentation code in this addresse : gilbert.robs@yandex.ru
Thank you.

virgo kk

virgo kk (view profile)

Hi I'm research scholar. Can anyone send this code?
This code must be useful for me to research.
b15t2018b@edu.tottori-u.ac.jp
Thank you your help

Rahul Sharma

Rahul Sharma (view profile)

I am research scholar. can anyone send this code it will be useful for me. email ID is sharmarahul.26dec@gmail.com

Chungmin Han

Chungmin Han (view profile)

Hello :) I'm a research assistant and was looking for volumetric visualization, would you mind sending me the code?
cmhan616@utexas.edu - appreciate it.

Sophia Nelson

Sophia Nelson (view profile)

This model is amazing. Im doing a project with the growth of gliomas in the brain and this code would be supper helpful in modeling how brain tumors affect the volume of the brain.
Could I please get the code for snelson11@hawk.iit.edu
thank you so much

meer

meer (view profile)

can you send me the code syazmeer.sabudn07@s.unikl.edu.my

Eliane Brechbühl

Eliane Brechbühl (view profile)

Hi, could you please send me your code? Thank you. eliane.brechbuehl@epfl.ch

Mohammed Otibi

Mohammed Otibi (view profile)

Hi, I am a student of applied mathematics and I working on a medical image processing project.Could you please send me your code to my mail address

Maah44@outlook.com

I appreciate your help .

MUHAMMAD ALKHUDAYDI

MUHAMMAD ALKHUDAYDI (view profile)

yuhan

yuhan (view profile)

Hello, I am a student of electrical engineering and I working on a medical image processing project.Could you please send me your code to my mail address?
867243772@qq.com
thanks.

Narosh Shibu Mathew

Narosh Shibu Mathew (view profile)

Could you send me the code so I can study the codes. thank you very much.
naroshshibumathew@gmail.com

Latha Kondameedi

Latha Kondameedi (view profile)

Hey i am a biomedical student.
Can please send me the code.
kondameedimamatha@gmail.com

Sheng-Yao Huang

Sheng-Yao Huang (view profile)

could you please provide me this code.
thank you.
vic.huang1973@gmail.com

kamal ahmadiyan

kamal ahmadiyan (view profile)

Hello, I am a student of electrical engineering and I working on a medical image processing project.Could you please send me your code to my mail address?
kamalahmadiyan1376@gmail.com
thanks.

virgo kk

virgo kk (view profile)

Hello, I am a student of electrical engineering. I try to use your code for my study of Image processing. So could you send me your code to my mail address??
I really need it. My mail address is B15T2018B@edu.tottori-u.ac.jp

Sofia Ostellino

Sofia Ostellino (view profile)

ahmed nageeb

ahmed nageeb (view profile)

Hello , i am student , please can you send me your code in the video?? at ahmedmaelesawy@gmail.com

haohaohao-

haohaohao- (view profile)

Hello, I am a student of electrical engineering. I am researching a project on 3D brain printing, which needs to study the part of image segmentation. Would you like to share your code with me? lancelot_hou@outlook.com Thank you.

Oluwatosin Olagbaju

Oluwatosin Olagbaju (view profile)

Hello , I am an Imaging and Nuclear Medicine research student and i am working on medical image project . could you please share the codes used in this video with me ?. triplet852002@gmail.com

Lucy Daniela Campos Vega

Lucy Daniela Campos Vega (view profile)

Hello, I am biomedical student and I working on a medical image project. Could you please send me the code you used in your video?
daniela.95cv@gmail.com

Thanks!

stewart mclennan

stewart mclennan (view profile)

Hi, many thanks for the very useful video series. Like everyone else I am also hoping to get a copy of the brainscan.m code (Email: stewart.mclennan@hotmail.co.uk).
Hopefully this is ok.
Best,
Stewart

Zheng Fang

Zheng Fang (view profile)

Hi I am biomedical engineering student. Can you please share the source code of brainscan.m to mn18zf@leeds.ac.uk, I really need it for my project.

Arkojyoti Chakraborty

Arkojyoti Chakraborty (view profile)

Hi I am biomedical engineering student.can you share the source code of brainscan.m on arko.arsenal@gmail.com

Sebastian Ramirez

Sebastian Ramirez (view profile)

hi, i´m student on medical image processing. Could you share the codes on sebastianr2812@gmail.com?.
Thanks

BIANCA DATOLA

BIANCA DATOLA (view profile)

Hi, i'm a student working on a medical images project. could you please share the codes on
bianca.datola@gmail.com
thanks so much
bianca

Fatemeh Bashiri

Fatemeh Bashiri (view profile)

Hi, I am a student working on medical image processing, and I need to segment brain. Could you share the codes on fatemehbashiri2@gmail.com? I'll be thankful <3

YIFEI WU

YIFEI WU (view profile)

Hi, I am a student in University of California, and I am working on medical image processing. Could you share the codes on y3wu@eng.ucsd.edu? Thank you so much!

Antonio Fasano

Antonio Fasano (view profile)

Hi, I am a medical student working on a medical images project. Could you please share the codes on antonio.fasano89@gmail.com?
Many thanks!
Antonio

Shan

Shan (view profile)

Shan

Shan (view profile)

Hi, I am a bioengineering student working on a medial image processing project. Could you please send me the code (BrainScan.m) for reference?
bcjump@aol.com
Thank you!

Xi Chen

Xi Chen (view profile)

Hi
Hi, I am also a student working on medical image processing and image segmentation projects. Could you please send me the code (BrainScan.m) for reference as well? nickchen1996@gmail.com
Thank you so much!

leonardus Sandy

leonardus Sandy (view profile)

Hi,

The demonstration was really helpful. Could you please share the code on leonardusandy@gmail.com

Many thanks
Sandy

Syed Ahmed Zaidi

Syed Ahmed Zaidi (view profile)

Could you please send me the code at legitarmada@gmail.com

Akram Musaad

Akram Musaad (view profile)

Hello, i am a student and working on image segmentation project. Can you please send me the code for reference. akam.mu92@gmail.com.
Thanx a lot.

Gimantha Upasena

Gimantha Upasena (view profile)

Hey could you send the code for sliceomatic function. I'm working on image processing as well and this would really benefit.

francesca lima

francesca lima (view profile)

HI,could you please send the code (BrainScan.m) on francylima94@gmail.com?I'm working on a similar project:)
It would be really helpful, Thank you very much.

saumya singh

saumya singh (view profile)

plz send the complete code my on my mail
saumyasingh2412@gmail.com

Abuzar Qureshi

Abuzar Qureshi (view profile)

PLZ send the complete code on my mail
iphone1612.s@gmail.com
Best Wishes

NAEEM LATHEEF 15BMD0068

NAEEM LATHEEF 15BMD0068 (view profile)

Hello sir,
I'm working on a similar project. Since this is my first attempt to this type of project I'm in need of a sample code for reference. Please send me this code at naeemlatheef97@gmail.com.
Thank you!

Helge

Helge (view profile)

Hello,

where can I view the video, or got it removed because it's outdated?

Best wishes

Victor Plaza

Victor Plaza (view profile)

Manasa T K

Manasa T K (view profile)

Ramya Sakthivel

Ramya Sakthivel (view profile)

Hello sir,
Am working on the project similar to this. And am in need of the sample code for reference since this is my first attempt to thus type of project. Can so please send me this code at ramya050997@gmail.com.
Thank you!

voxey

voxey (view profile)

sliceomatic error , tool is not there , its not working? very bad

mohsin rao

mohsin rao (view profile)

plz send me all code bcz in this code i'm facing the errors plz send the all cods on
mohsinrao1516@gmail.com

. .

. . (view profile)

HI,could u please send the code on sprahul.kumar@gmail.com.com
It would be really helpful, Thank you very much.

nder

nder (view profile)

hello..im a student and its new thing for me to work on medical image..can you send the code to my email please....nderek88@gmail.com thank you very much...

Ahmed Al-Hami

Ahmed Al-Hami (view profile)

Hello
I am medical student. Can you please send the code to my email
alhamiahmad@stud.uni-obuda.hu
Thank you very much.

ebrahim senan

ebrahim senan (view profile)

Could you send me the code so I can study the codes. thank you very much.
senan1710@gmail.com

mohammad sadegh ahmadzadeh

mohammad sadegh ahmadzadeh (view profile)

can you send me the code so I can study the codes. thank you very much.
mohammad.s.ahmadzadeh@gmail.com

Abhinav Mishra

Abhinav Mishra (view profile)

Could u please send the code on abimishra98@gmail.com
It would be really helpful, Thank you very much.

Adam Golightly

Adam Golightly (view profile)

Could you send the code to highonflying36@gmail.com

Thank you very much!

md sohel Rana

md sohel Rana (view profile)

Could you please send me the code to 1551986795@qq.com

Thanks in advance!

Matt

Matt (view profile)

Hi,

The demonstration was really helpful. Could you please share the code on chamoxe@hotmail.fr

Many thanks
Matthieu

Ivan Krstanovic

Ivan Krstanovic (view profile)

Thank you for helping me learn image processing... I'm having some trouble with the code. Could you send me the code to noobprogramer@yahoo.com

Thank you again and have a nice day.

man-chen huang

man-chen huang (view profile)

Could you please send the code to jenny22930794@gmail.com
thank you!

Denver IPT

Denver IPT (view profile)

Could you please send me the code to nlevelset@gmail.com

Thanks in advance!

Naveen R

Naveen R (view profile)

please send the code
rnaveen8991@gmail.com

Sandra Banda

Sandra Banda (view profile)

I loved the video.
Kindly send me the code for the example to my email: nagawabanda@gmail.com

Hassan R

Hassan R (view profile)

free.psk@gmail.com

prathibha g

prathibha g (view profile)

kindly send me the code to drgururajahebbar@gmail.com

mehak aggarwal

mehak aggarwal (view profile)

I appreciate it if you send me the code to mehakaggarwal106@roocketmail.com

Yair Goldfarb

Yair Goldfarb (view profile)

I appreciate it if you send me the code to yairgold@yahoo.com, thanks and all the best.

Carlos Caldera

Carlos Caldera (view profile)

appreciate it if you send me the code npq988@my.utsa.edu or cjacobcaldera@gmail.com

Mahsa Tajdari

Mahsa Tajdari (view profile)

I appreciate if you send me the code at mahsa.tajdari91@gmail.com

muhaimin mahfudz

muhaimin mahfudz (view profile)

greetings, appreciate to send me the code at mexicanthugz@gmail.com. currently an undergrad student segmenting brain mri

Shawn Wu

Shawn Wu (view profile)

I appreciate if you send me the code.--shengywu58@gmail.com

APS

APS (view profile)

Hello please send me the code to my email please.
amalsnair34@gmail.com

sheetal wadhai

sheetal wadhai (view profile)

Hello
Please send me the code to my email please.
sheetalwadhai05@gmail.com

Kifra Franckie

Kifra Franckie (view profile)

Hello ... I appreciate a lot your demonstration.... Would you please send me the code to fkifra@gmail.com

Lenin Pañi Panama

Lenin Pañi Panama (view profile)

hello, send me code to email, please
thanks
leninr.panip@ucuenca.edu.ec

Usama Adil

Usama Adil (view profile)

Hello
Send me code to email please
Thanks
usamabuz@gmail.com

Yong Min Lee

Yong Min Lee (view profile)

Please help!!!!!
adsqz12@naver.com

SHIVA SHANTHI NAREDDY

SHIVA SHANTHI NAREDDY (view profile)

shivanichinni1997@gmail.com

Stamatis Vroutsis

Stamatis Vroutsis (view profile)

Hello! your video was very helpful! I want to make a project, can you please send the hole code of BrainScan.m?: stam_v@yahoo.gr
Thank you in advance

Akash Gupta

Akash Gupta (view profile)

Hi,

The demonstration was really helpful. Could you please share the code on 517207@swansea.ac.uk

Many thanks
Akash

Friedman MAHARILAZA

Friedman MAHARILAZA (view profile)

Hello everyone!
How to select one image on montage and choose between the multiple images to select, please?It's my problem now!
Please send me the code to my email please. Thanks.
friedman.maharilaza@gmail.com

Javaid Iqbal

Javaid Iqbal (view profile)

Hello
Please send me the code to my email please. Thanks.
javaid.ciit@gmail.com

gizem tak

gizem tak (view profile)

hey there hello
Is there anyone that can help for mr brain extraction for tumor with watershed algorthm segmentation in matlab please

abang mohd

abang mohd (view profile)

Hi there, Can you please send me the code for my research references. Your cooperation is highly appreciated. You can send the example through my email. abganaqi2@gmail.com

EWERTON PACHECO DE SOUZA

EWERTON PACHECO DE SOUZA (view profile)

Hi... it´s a helluva tool. Can you please send me the code? Thank you very much.

ewerton.ene@gmail.com

NAEEM LATHEEF 15BMD0068

NAEEM LATHEEF 15BMD0068 (view profile)

Please send me the code to my email please. Thanks.
naeemlatheef619@gmail.com

Kaveh Laksari

Kaveh Laksari (view profile)

Hello, is there a way to download the .m files? Thanks

Muhammad Usman

Muhammad Usman (view profile)

this is very helpful please send be code to my email

14ect34@gmail.com

thanku very much

SUNG WON KIM

SUNG WON KIM (view profile)

Hello
I am medical student. Can you please send the code to my email?
trevoriu2582@yonsei.ac.kr
Thank you very much.

Tal Goldfryd

Tal Goldfryd (view profile)

Hi
Can you please sende the code to my email. It will be very helpful or my project
talgold9@gmail.com
Thanks alot

Mahdi Ali Warsame

Mahdi Ali Warsame (view profile)

could you please provide me this code.
thank you.
mahdi.abdulle@ogr.sakarya.edu.tr

Sruthi Saradha Srinivasan

Sruthi Saradha Srinivasan (view profile)

Hi! It would be really helpful for my project if you could email me the code for reference : sruthisrinivasan94@gmail.com .
Thanks !

Sathyathas Puvanasunthararajah

Sathyathas Puvanasunthararajah (view profile)

Please Could you mail me the MATLAB code for brain segmentation using MRI image to pthas88@gmail.com

Muhd Harith Mohd Johan

Muhd Harith Mohd Johan (view profile)

Hello i am student need to have coding for my assignment. Please email to me at muhdharithmohdjohan@gmail.com.

fwteinh zosimidou

fwteinh zosimidou (view profile)

Could you please provide me with the code?
fwteinhzosimidou@gmail.com

Laila

Laila (view profile)

Could you please provide me with the code?
umisraa20@gmail.com

Hussen Alwazne

Hussen Alwazne (view profile)

Jasvir Bahl

Jasvir Bahl (view profile)

Great video but would I please be able to get the code? I am a PhD student in Australia. jasvir.bahl@gmail.com

Jasvir Bahl

Jasvir Bahl (view profile)

Great video but would I please be able to get the code? I am a PhD student in Australia

Tawhidur Rahman

Tawhidur Rahman (view profile)

just running the project in matlab will be enough to get pass with project ?everyone ?

divya sirigineedi

divya sirigineedi (view profile)

hi sir,iam graduate of the department of ECE at RGUKT nuzvid, i want to do project based on brain tumour segementation using MRI images .so i want code for that .will u plz send it to my mail.i will be thankfull to u sir

xu shuai

xu shuai (view profile)

Hi sir，I am a graduate of the Department of Mathematics at Shanghai University ，I am learning medical image segmentation using Matlab. could you please send me your code my e-mail is Xs_222222@shu.edu.cn

Ashlyn Aiello

Ashlyn Aiello (view profile)

Hi. Would it be possible to get the code you used in the video? I'm working on a project at BU that uses similar analysis of large series of medical images. Thanks.
ajma@bu.edu

Edgar Villagran

Edgar Villagran (view profile)

I would like too much to receive the code you use in the video. I want to use it for teaching purposes in Biomedical Engineering and of course the citations and aknowledgmnts to you all the time will be provided. villagran.e@gmail.com

Jahanzeb Saqib

Jahanzeb Saqib (view profile)

Mingyang Wang

Mingyang Wang (view profile)

Hello, currently studying this video as a part of a research project, Could you please send me the code you used in your video?
happymingyang@gmail.com

Thanks!

Elliott Fullerton

Elliott Fullerton (view profile)

Hello, Looking into MRI as part of a PhD project. Could you please send me your code from the video. e.fullerton@lboro.ac.uk
Kind Regards
Elliott

islam abdelhamid

islam abdelhamid (view profile)

could you please send me your code my e-mail is iabdelhamid3@gmail.com

Sue123

Sue123 (view profile)

Hello,
I downloaded code but it is not working. I had error code this :
Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
I need help you. Thank you more much!
My email id is:971183504@qq.com

Shujin Zhu

Shujin Zhu (view profile)

Hi sir, this case seems useful to me, it will be great if you could share the code with me s66zhu@uwaterloo.ca . Much appreciated!

Srinivas Saripalle

Srinivas Saripalle (view profile)

Hi, I am learning medical image segmentation using Matlab. Can you please send the package of the project. My email is: ssaripalle@gmail.com

Thanks
Sri

Tony Kong

Tony Kong (view profile)

Hi, I'm a computer science master student at Northeastern University. Could you please send me the package of the project? My email is kong.zhe@husky.neu.edu Thank you very much

Courtney Nelson

Courtney Nelson (view profile)

Hi, I'm a biomedical engineering student at The Catholic University of America and I'm working on a project to analyze the gray versus white matter. could you please email me codes or advice to 83nelson@cua.edu

Thank you!

Lorenzo Valente

Lorenzo Valente (view profile)

Hi, I'm a computer science student of the 'University of Salerno and I'm writing a thesis on the MRI images. Could you please send me the whole package of the project?

Thank you!
email: valentelorenzo@live.it

Christopher Rahimi

Christopher Rahimi (view profile)

Hello,

I'm trying to estimate ventricle volume in the brain using matlab. Can you please email me codes and any advice you may have @ ckrahimi18@gmail.com

Thank You

reham targam

reham targam (view profile)

Hi Sir, can you email me the code for my project reference? Email to reham.targam@gmail.com

swarada kanap

swarada kanap (view profile)

need coding on image segmentation and morphological operators on brain tumor images
yash.hajare29@gmail.com

Aliatabassum Abdulsalam

Aliatabassum Abdulsalam (view profile)

How to extract tumor after fuzzy c-mean segmentation applied on MRI brain images

wu w

wu w (view profile)

if it is possible could you please send me your code my e-mail is : wemx50029@yahoo.com.tw

Elif Akcay

Elif Akcay (view profile)

if it si possible could you please send me your code my e-mail is : eliftugbaakcay@gmail.com

sam CP

sam CP (view profile)

I want to remove skull from brain using morphological operations and thresholding.. i have wrote the following code ,but i didn't get skull stripped MRI..Please guide me..

clear all; clc [filename pathname] = uigetfile({'*.jpg';'*.bmp'},'Select MRI'); inputimage=strcat(pathname, filename); I = imread(inputimage);

figure,imshow(I), title('input');

se = strel('disk',7);

closeBW = imclose(I,se); figure, imshow(closeBW);title('close operation');

afterOpening = imopen(closeBW,se); figure, imshow(afterOpening,[]);title('open operation');

J=I-afterOpening; figure, imshow(J,[]);title('Skull of MRI');

K=I-J; figure, imshow(K,[]);title('Skull removed MRI');

sai govind

sai govind (view profile)

could you please provide me this code.
thank you.
govind.sai62@gmail.com

Jessica Xian

Jessica Xian (view profile)

Hello,
Would it be possible to send the coding to my email: zcqsjxi@ucl.ac.uk
Thank you!

Hai Nguyen

Hai Nguyen (view profile)

need coding on image segmentation
Email: thanhhai7486@gmail.com
Thanks very much

Preeti Sharma

Preeti Sharma (view profile)

need coding on image segmentation

Arjun KV

Arjun KV (view profile)

could you mail me the code for the same.
arjungopinath310@gmail.com

shabaz khan

shabaz khan (view profile)

sir, iam a PG student doing project on the mri brain white matter segmentation.Will you please help me to get the database for the same . My mail id is shabazkhanbme15@gmail.com

Henry Ortega

Henry Ortega (view profile)

Hello, I am not sure how this comment section works, but could you send me this code about segmentation? Thank you in advance.

hortega@fisica.edu.uy

Jash Bhayani

Jash Bhayani (view profile)

Hi, Could you please email the code for the same? Thanks!
email id: jashbhayani18@gmail.com

Jash Bhayani

Jash Bhayani (view profile)

Hi, Could you please email the for the same? Thanks!
email id: jashbhayani18@gmail.com

Tran Thai Son

Tran Thai Son (view profile)

hello sir , can you email me the code at
tranthaison226@gmail.com ?
I need it to make segmentation for the brain image
it very imp so please send the code

thank you very much!!

Seung Yong Lee

Seung Yong Lee (view profile)

hello sir , can you email me the code at
lsy920607@naver.com ?
I need it to make segmentation for the brain image
it very imp so please send the code

thank you very much!!

Seung Yong Lee

Seung Yong Lee (view profile)

Sae Bom Lee

Sae Bom Lee (view profile)

Hello, I need this code for my project.
Can you send me this code about MRI Brain segment?
Please send email me.

My email is newspg93@gmail.com

Thank you.

Bala Subramaniam

Bala Subramaniam (view profile)

Could you please share the codes for this topic ??Thanks in advance
Mail id : bsubramaniam11@gmail.com

Soo Jong Kim

Soo Jong Kim (view profile)

In Medical Image Processing with MATLAB
Can you send me his code in that lecture?
please I need it..
My email is ksj9108@naver.com

thank you

faisal aziz

faisal aziz (view profile)

can any one send me the algorithm for 3d reconstruction from segmented mri 2d slices in matlab????

Yameng Liu

Yameng Liu (view profile)

My email is yameng.liu@duke.edu

Yameng Liu

Yameng Liu (view profile)

Hello I am a graduate student working on medical image segmentation. Can you share me the codes?
Thanks

fatma

fatma (view profile)

Hello,

I downloaded code but it is not working. I had error code this :

Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

I need help you. Thank you very much!
email :fatmademirezen@gmail.com

reshma hiralal

reshma hiralal (view profile)

hello sir,
i am a pg student working in image processing, i am working on MRI brain image segmentation. can u share me the codes. as the downloaded code is not working.
mail id: reshma.hiralal@hotmail.com

Wenjun Wu

Wenjun Wu (view profile)

Hello,

Can you email me the code at wuwenjun1995@gmail.com?

Thank you very much!

@MSM

@MSM (view profile)

hello sir , can you email me the code at
masusm89@hotmail.com
I need it to make segmentation for the brain image

thank you very much

Hong Shan Lim

Hong Shan Lim (view profile)

Hi Sir, can you email me the code for my project reference? Email to hslim013@unisim.edu.sg

Thanks

saladi saritha

saladi saritha (view profile)

can you please provide me the code for my study project? my email id: saritha.saladi3188@gmail.com

Adnan

Adnan (view profile)

Will you please send me the code for study purpose?

My email is write2adnanalamkhan(at the rate)gmail.com

fateen nur nadhira

fateen nur nadhira (view profile)

can you send the code to me please? fateennad94@gmail.com

fateen nur nadhira

fateen nur nadhira (view profile)

can you sens the codes to me, i need to do brain segmentation for alzheimer disease

Cixian Lu

Cixian Lu (view profile)

aalishan ali

aalishan ali (view profile)

can you send me the code please ? aalishan0806425@gmail.com

sheetal wadhai

sheetal wadhai (view profile)

Could you send me the code please?
it very imp so please send the code
sheetalwadhai05@gmail.com

Mac

Mac (view profile)

Could you send me the code please?
mrungta13@gmail.com
Thanks!

orchis_2005

orchis_2005 (view profile)

Can I get the codes please?
Thanks!

shaheen kanwal

shaheen kanwal (view profile)

could you send me the code please ?
shaheenkanwal1995@gmail,com
Thanks :)

AKS

AKS (view profile)

Can I get the codes please?
Thanks!

Maria Kline

Maria Kline (view profile)

I would like to do something similar, except with a knee MRI, very fascinated by this could you please send me it at maria.kline@yahoo.com

mima zebouchi

mima zebouchi (view profile)

i wont to segmentation of whitematter and gray matter

hmmmmm

hmmmmm (view profile)

my project is brain MRI segmentation and 3D reconstruction ...
can you please send to me segmentation code in this address zameerabbas72@gmail.com

mima zebouchi

mima zebouchi (view profile)

sr i have a problem:?? Error using ==> lt
Matrix dimensions must agree.

Error in ==> brainscan2 at 116
mriBrainPartition=(mriAdjust < level & mriAdjust>= 0)==2;%2=graymatter

>>

mima zebouchi

mima zebouchi (view profile)

my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse :
mimazebouchi@gmail.com

Sheena Ratnam Priya

Sheena Ratnam Priya (view profile)

could you please help me on tumor extraction and area calculation?
sheenasandie1794@gmail.com

merve acar

merve acar (view profile)

Thnak you Sir for the nice work !
my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : merve.acar@atauni.edu.tr

thnak you in advance !
Regards

Feten

Feten (view profile)

It's OK the problem is fixed. After mading modification described on
http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic#comments
I restart the matlab and it 's working.

Feten

Feten (view profile)

I am using matlab on Linux.

Could you help me to fix this problem:
Reference to non-existent field 'toolbar'.
Even after trying the fix described on 'http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic'

Traceback of error:
Error in figmenus>OverrideStickyUserPreferences (line 449)
set(d.toolbar,'visible',prefs.anntoolbar_Checked)

Error in figmenus (line 105)
d = OverrideStickyUserPreferences(d);

Error in sliceomaticfigure (line 136)
d = figmenus(d);

Error in sliceomatic (line 203)
d = sliceomaticfigure(d);

Error in analyze_series8 (line 68)
sliceomatic(double(D))
By 'Justas Bezaras'

Ayani Kapugama Arachchi

Ayani Kapugama Arachchi (view profile)

Hi..
I got these errors while running the sample

Error in ==> imtool at 173
if ~internal.images.isFigureAvailable()

??? Output argument "hout" (and maybe others) not assigned during call to
"C:\Users\nethma\Desktop\MATLAB\R2011a\toolbox\images\imuitools\imtool.m>imtool".

Error in ==> imview at 18
hh = imtool(varargin{:});

Error in ==> analyze_series8 at 55
imview close all

Please Help me, HOW TO RESOLVE THIS ERROR??

AZama

AZama (view profile)

I am using .dcm files of 512x512 size, i am getting an error
voxel_size =

0.4492 0.4492 5.0000

Name Size Bytes Class Attributes

D 512x512x2 1048576 uint16

Index exceeds matrix dimensions.

Error in analyze_series8 (line 49)
im = squeeze(D(:,:,i));
PLEASE HELP ME, how to resolve this error

Ganesh Raut

Ganesh Raut (view profile)

Manu BN

Manu BN (view profile)

sdh32

sdh32 (view profile)

To fix the error:

Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');

Get the function vline from:

http://www.mathworks.com/matlabcentral/fileexchange/1039-hline-and-vline

To fix the error

Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

change the instances of imview to imtool in analyze_series8.

iza

iza (view profile)

Help me solve this error...

Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');

Peng Dai

Peng Dai (view profile)

great tools, it's based on old version of Matlab. have to make a little change to run on version2012

Hieu Lam

Hieu Lam (view profile)

hi, i am using matlab R2012b and they have the error:
Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.

Error in analyze_series8 (line 47)
imview(im,[0 max_level])

How to fix it? thanks

Xinzhou

Xinzhou (view profile)

Hello, I am student learning medical image processing by applying matlab. When I use the function "threshold_tool' in this folder. It shows function 'vline' not defined. Is there any way can solve this problem. Thank you so much.

shruti

shruti (view profile)

Sir,I am searching for segmentation of gray matter from T1 weigheted brain MR images.Can u plz send me the code to this address.
My id:shruti.gubbi77@gmail.com

sp 2013

sp 2013 (view profile)

Sir, pls give me the matlab code for whitematter sementation from mr images my mail id is :adish321309@gmail.com

sp 2013

sp 2013 (view profile)

sp 2013

sp 2013 (view profile)

Sir,I am searching for segmenting white matter from a T2 weighted brain MRI scan. But I could not get the correct tutorial to follow it. Please suggest me an algorithm that works better and accurately to segment the gray matter alone from the T2 wieghted MRI scan image my mail id is:adish321309@gmail.com

sp 2013

sp 2013 (view profile)

Sir i'm a student and my project is mild brain injury detection
Can you please send to me the segmentation code in this addresse : adish321309@gmail.com

sp 2013

sp 2013 (view profile)

sir, iam a PG student doing project on the mild brain injury detection.Will you please help me to get the database(t2 weighted mri of mild brain injured images) for the same . My mail id is adish321309@gmail.com

NTUT

NTUT (view profile)

Hello Sir, I am PhD student of National Taipei University of Technology. i doing a project in dementia with MRI brain images using freesurfer and Matlab software. can you please tell me how to run new subject of images in Matlab. thank you! My email id is: avichandra0420@gmail.com

majid SHOKRI

majid SHOKRI (view profile)

sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is majidshokri_boj@yahoo.com

redouan pitrochka

redouan pitrochka (view profile)

Thnak you Sir for the nice work !
Please i'm a student and my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : redouan_lahmyed@live.fr
thnak you in advance !
Regards

soniya joy

soniya joy (view profile)

Aysha

Aysha (view profile)

sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is jasaem.21@gmail.com

Fatemeh

Fatemeh (view profile)

If you want to download this useful package, click on download submission button, http://www.mathworks.com/matlabcentral/fx_files/4879/6/MRI_Brain_Scan.zip

haribabu

haribabu (view profile)

how to download this package..
please help me...

Hg

Hg (view profile)

devabhaktuni phaneendrababu

devabhaktuni phaneendrababu (view profile)

Can you please help me how to download this file

SIVA

SIVA (view profile)

its very use ful ,,,.

naila

naila (view profile)

I couldn't able to download the code. please can any one help me?

elise lau

elise lau (view profile)

I'm new to matlab, doing segmentation of brain tumor from 2D MRI images for my project. anyone have the coding? can help me?thx very much..

yuvaranjini

yuvaranjini (view profile)

Really good work sir. It would be nice if you add some description to the code.
It helps me a lot

mariam

mariam (view profile)

dear All, would you please guide me how I can 1/8 of volume image I mean I can reconstruct the volume image but I do not know how to extract for example 90 degree volume slice of it. I appreciate your help

priya dharsini

priya dharsini (view profile)

good work sir. iam a PG student doing project on the same. I dont know how to split white matter from a brain MRI image using matlab.Will you please help me. My mail id is dharsiniece@gmail.com

manoj

manoj (view profile)

high to all........actually i am beginner in image segmentation could anybody help me

my email id is manoj4736@gmail.com

thanks

porngamol sitlaothaworn

porngamol sitlaothaworn (view profile)

it helps me in senior project :)

Nurhasanah Ivansyah

Nurhasanah Ivansyah (view profile)

it's very good tutorial. Very good coding for matlap brain image processing.
but can you help how to segmenting brain white matter, gray matter and cerebrospinal fluid. if you have algoritm or code in matlab, help give me.
i really need....

Dr. Deepak Kumar Rout

Dr. Deepak Kumar Rout (view profile)

Robert Bemis

Robert Bemis (view profile)

Note for users who get stuck by the IMVIEW error. That function was replaced by IMTOOL (years ago). In analyze_series8.m just replace all occurrences of "imview" with "imtool" (and save).

See also
>> doc imview

Preeti

Preeti (view profile)

i am getting the error in imtool and not able to remove even downloading the patch as advised. please help.

sheldon

sheldon (view profile)

your work is good. it is helping me a lot. but i am facing a small problem if i give input(dcm files) of larger size like 138 kb other than that you used is 129 kb. please help me out with this. i am using matlab r2008a. i get the error;

voxel_size =

0.9375 0.9375 6.0000

Name Size Bytes Class Attributes

D 256x256x12 1572864 uint16

??? Index exceeds matrix dimensions.

Error in ==> analyze_series8 at 43
im = squeeze(D(:,:,i));

after the dicom files stored are read.

Nandan S

Nandan S (view profile)

shokrollah derafsh

Fazl-e- wahab

mahima bansal

Make it more explanatory. so that it could be efficient for a beginner.

sajal chirvi

rohit garg

i wanted a code for segmentation of brain tumor from 2D MRI images.

nandy kidd

getting the following error in R2007

??? Output argument "hout" (and maybe others) not assigned during call to "C:\Program Files\MATLAB\R2007a\toolbox\images\imuitools\imtool.m (imtool)".

Error in ==> imtool at 155
close_all = nargin == 2 && ischar(varargin{1}) && ischar(varargin{2}) && ...

Error in ==> imview at 18
hh = imtool(varargin{:});

Error in ==> analyze_series8 at 53
imview close all

FABIAN FORERO

me sirve para el trabajo de grado

mitali lembhe

Dheeraj Chahal

Excellent code

basil abu-hijleh

Very good coding for matlap brain image processing

Jau-Jie You

Good tutorial.

chethana s s

matlab codeing on brain image segmentation

Joseph Paul

l smith

very good!

Roman Rodionov

Excellent presentation as an introductory talk for those who start MRI analysis with MATLAB.
Thank you very much!

aftab muhammad

no

Muhammad altaf

help ful for the study of MRI
I am in search for xray enhancement

Mohammad Ahmad

Jiang Yun

It's helpful for my study in medical imaging. I've not been kowning that MATLAB could also deal with the DICOM files.

Sanaz negahbani

program with Matlab software for leaf classification & image segmentation
thanks alot

PAN QF

hamid reza imani

bahare vafadar

George Theofilogiannakos

ee fzaf

S.Ravikumar sampathkumar

zj zhao

ww

yd ccec

good ,i like it

roopa m

wenshu lee

it can help the students interested in the image processing.

Updates

1.5.0.1

Updated license
1.5.0.0

copyright
1.1.0.0

Fix thumbnail for animated GIF
1.0.0.0

Required version corrected.

R2006a incompatibilities were recently reported. See the ReadMe.txt file for more details.
MATLAB Release Compatibility
Created with R14
Compatible with any release
Platform Compatibility
Windows macOS Linux
Acknowledgements

Inspired by: Sliceomatic, hline and vline

MRI Brain Scan/