MRI Brain Segmentation
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- 266 downloads
This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used for webinars for medical applications broadcast live on May 6, 2004.
This package includes some MATLAB code and an MRI scan series consisting of 60 DICOM images. Note that this code relies on MATLAB Central submissions from others. Detailed references to those sources are included.
Comments and Ratings (210)
Updates
| 1.5.0.1 | Updated license |
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| 1.5.0.0 | copyright |
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| 1.1.0.0 | Fix thumbnail for animated GIF |
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| 1.0.0.0 | Required version corrected. |
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R2006a incompatibilities were recently reported. See the ReadMe.txt file for more details. |
MATLAB Release Compatibility
Platform Compatibility
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Acknowledgements
Inspired by: Sliceomatic, hline and vline
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Oluwatosin Olagbaju (view profile)
Hello , I am an Imaging and Nuclear Medicine research student and i am working on medical image project . could you please share the codes used in this video with me ?. triplet852002@gmail.com
Lucy Daniela Campos Vega (view profile)
Hello, I am biomedical student and I working on a medical image project. Could you please send me the code you used in your video?
daniela.95cv@gmail.com
Thanks!
stewart mclennan (view profile)
Hi, many thanks for the very useful video series. Like everyone else I am also hoping to get a copy of the brainscan.m code (Email: stewart.mclennan@hotmail.co.uk).
Hopefully this is ok.
Best,
Stewart
Zheng Fang (view profile)
Hi I am biomedical engineering student. Can you please share the source code of brainscan.m to mn18zf@leeds.ac.uk, I really need it for my project.
Arkojyoti Chakraborty (view profile)
Hi I am biomedical engineering student.can you share the source code of brainscan.m on arko.arsenal@gmail.com
Sebastian Ramirez (view profile)
hi, i´m student on medical image processing. Could you share the codes on sebastianr2812@gmail.com?.
Thanks
BIANCA DATOLA (view profile)
Hi, i'm a student working on a medical images project. could you please share the codes on
bianca.datola@gmail.com
thanks so much
bianca
Fatemeh Bashiri (view profile)
Hi, I am a student working on medical image processing, and I need to segment brain. Could you share the codes on fatemehbashiri2@gmail.com? I'll be thankful <3
YIFEI WU (view profile)
Hi, I am a student in University of California, and I am working on medical image processing. Could you share the codes on y3wu@eng.ucsd.edu? Thank you so much!
Antonio Fasano (view profile)
Hi, I am a medical student working on a medical images project. Could you please share the codes on antonio.fasano89@gmail.com?
Many thanks!
Antonio
Shan (view profile)
Shan (view profile)
Hi, I am a bioengineering student working on a medial image processing project. Could you please send me the code (BrainScan.m) for reference?
bcjump@aol.com
Thank you!
Xi Chen (view profile)
Hi
Hi, I am also a student working on medical image processing and image segmentation projects. Could you please send me the code (BrainScan.m) for reference as well? nickchen1996@gmail.com
Thank you so much!
leonardus Sandy (view profile)
Hi,
The demonstration was really helpful. Could you please share the code on leonardusandy@gmail.com
Many thanks
Sandy
Syed Ahmed Zaidi (view profile)
Could you please send me the code at legitarmada@gmail.com
Akram Musaad (view profile)
Hello, i am a student and working on image segmentation project. Can you please send me the code for reference. akam.mu92@gmail.com.
Thanx a lot.
Gimantha Upasena (view profile)
Hey could you send the code for sliceomatic function. I'm working on image processing as well and this would really benefit.
francesca lima (view profile)
HI,could you please send the code (BrainScan.m) on francylima94@gmail.com?I'm working on a similar project:)
It would be really helpful, Thank you very much.
saumya singh (view profile)
plz send the complete code my on my mail
saumyasingh2412@gmail.com
Abuzar Qureshi (view profile)
PLZ send the complete code on my mail
iphone1612.s@gmail.com
Best Wishes
NAEEM LATHEEF 15BMD0068 (view profile)
Hello sir,
I'm working on a similar project. Since this is my first attempt to this type of project I'm in need of a sample code for reference. Please send me this code at naeemlatheef97@gmail.com.
Thank you!
Helge (view profile)
Hello,
where can I view the video, or got it removed because it's outdated?
Best wishes
Victor Plaza (view profile)
Manasa T K (view profile)
Ramya Sakthivel (view profile)
Hello sir,
Am working on the project similar to this. And am in need of the sample code for reference since this is my first attempt to thus type of project. Can so please send me this code at ramya050997@gmail.com.
Thank you!
selva kumar (view profile)
sliceomatic error , tool is not there , its not working? very bad
mohsin rao (view profile)
plz send me all code bcz in this code i'm facing the errors plz send the all cods on
mohsinrao1516@gmail.com
. . (view profile)
HI,could u please send the code on sprahul.kumar@gmail.com.com
It would be really helpful, Thank you very much.
nder (view profile)
hello..im a student and its new thing for me to work on medical image..can you send the code to my email please....nderek88@gmail.com thank you very much...
Ahmed Al-Hami (view profile)
Hello
I am medical student. Can you please send the code to my email
alhamiahmad@stud.uni-obuda.hu
Thank you very much.
ebrahim senan (view profile)
Could you send me the code so I can study the codes. thank you very much.
senan1710@gmail.com
mohammad sadegh ahmadzadeh (view profile)
can you send me the code so I can study the codes. thank you very much.
mohammad.s.ahmadzadeh@gmail.com
Abhinav Mishra (view profile)
Could u please send the code on abimishra98@gmail.com
It would be really helpful, Thank you very much.
Adam Golightly (view profile)
Could you send the code to highonflying36@gmail.com
Thank you very much!
md sohel Rana (view profile)
Could you please send me the code to 1551986795@qq.com
Thanks in advance!
Matt (view profile)
Hi,
The demonstration was really helpful. Could you please share the code on chamoxe@hotmail.fr
Many thanks
Matthieu
Ivan Krstanovic (view profile)
Thank you for helping me learn image processing... I'm having some trouble with the code. Could you send me the code to noobprogramer@yahoo.com
Thank you again and have a nice day.
man-chen huang (view profile)
Could you please send the code to jenny22930794@gmail.com
thank you!
Denver IPT (view profile)
Could you please send me the code to nlevelset@gmail.com
Thanks in advance!
Naveen R (view profile)
please send the code
rnaveen8991@gmail.com
Sandra Banda (view profile)
I loved the video.
Kindly send me the code for the example to my email: nagawabanda@gmail.com
Hassan R (view profile)
free.psk@gmail.com
prathibha g (view profile)
kindly send me the code to drgururajahebbar@gmail.com
mehak aggarwal (view profile)
I appreciate it if you send me the code to mehakaggarwal106@roocketmail.com
Yair Goldfarb (view profile)
I appreciate it if you send me the code to yairgold@yahoo.com, thanks and all the best.
Carlos Caldera (view profile)
appreciate it if you send me the code npq988@my.utsa.edu or cjacobcaldera@gmail.com
Mahsa Tajdari (view profile)
I appreciate if you send me the code at mahsa.tajdari91@gmail.com
muhaimin mahfudz (view profile)
greetings, appreciate to send me the code at mexicanthugz@gmail.com. currently an undergrad student segmenting brain mri
Shawn Wu (view profile)
I appreciate if you send me the code.--shengywu58@gmail.com
APS (view profile)
Hello please send me the code to my email please.
amalsnair34@gmail.com
sheetal wadhai (view profile)
Hello
Please send me the code to my email please.
sheetalwadhai05@gmail.com
Kifra Franckie (view profile)
Hello ... I appreciate a lot your demonstration.... Would you please send me the code to fkifra@gmail.com
Lenin Pañi Panama (view profile)
hello, send me code to email, please
thanks
leninr.panip@ucuenca.edu.ec
Usama Adil (view profile)
Hello
Send me code to email please
Thanks
usamabuz@gmail.com
Yong Min Lee (view profile)
Please help!!!!!
adsqz12@naver.com
SHIVA SHANTHI NAREDDY (view profile)
shivanichinni1997@gmail.com
Stamatis Vroutsis (view profile)
Hello! your video was very helpful! I want to make a project, can you please send the hole code of BrainScan.m?: stam_v@yahoo.gr
Thank you in advance
Akash Gupta (view profile)
Hi,
The demonstration was really helpful. Could you please share the code on 517207@swansea.ac.uk
Many thanks
Akash
Friedman MAHARILAZA (view profile)
Hello everyone!
How to select one image on montage and choose between the multiple images to select, please?It's my problem now!
Please send me the code to my email please. Thanks.
friedman.maharilaza@gmail.com
Javaid Iqbal (view profile)
Hello
Please send me the code to my email please. Thanks.
javaid.ciit@gmail.com
gizem tak (view profile)
hey there hello
Is there anyone that can help for mr brain extraction for tumor with watershed algorthm segmentation in matlab please
abang mohd (view profile)
Hi there, Can you please send me the code for my research references. Your cooperation is highly appreciated. You can send the example through my email. abganaqi2@gmail.com
EWERTON PACHECO DE SOUZA (view profile)
Hi... it´s a helluva tool. Can you please send me the code? Thank you very much.
ewerton.ene@gmail.com
NAEEM LATHEEF 15BMD0068 (view profile)
Please send me the code to my email please. Thanks.
naeemlatheef619@gmail.com
Kaveh Laksari (view profile)
Hello, is there a way to download the .m files? Thanks
Muhammad Usman (view profile)
this is very helpful please send be code to my email
14ect34@gmail.com
thanku very much
SUNG WON KIM (view profile)
Hello
I am medical student. Can you please send the code to my email?
trevoriu2582@yonsei.ac.kr
Thank you very much.
Tal Goldfryd (view profile)
Hi
Can you please sende the code to my email. It will be very helpful or my project
talgold9@gmail.com
Thanks alot
Mahdi Ali Warsame (view profile)
could you please provide me this code.
thank you.
mahdi.abdulle@ogr.sakarya.edu.tr
Sruthi Saradha Srinivasan (view profile)
Hi! It would be really helpful for my project if you could email me the code for reference : sruthisrinivasan94@gmail.com .
Thanks !
Sathyathas Puvanasunthararajah (view profile)
Please Could you mail me the MATLAB code for brain segmentation using MRI image to pthas88@gmail.com
Muhd Harith Mohd Johan (view profile)
Hello i am student need to have coding for my assignment. Please email to me at muhdharithmohdjohan@gmail.com.
fwteinh zosimidou (view profile)
Could you please provide me with the code?
fwteinhzosimidou@gmail.com
Laila (view profile)
Could you please provide me with the code?
umisraa20@gmail.com
Hussen Alwazne (view profile)
Jasvir Bahl (view profile)
Great video but would I please be able to get the code? I am a PhD student in Australia. jasvir.bahl@gmail.com
Jasvir Bahl (view profile)
Great video but would I please be able to get the code? I am a PhD student in Australia
Tawhidur Rahman (view profile)
just running the project in matlab will be enough to get pass with project ?everyone ?
divya sirigineedi (view profile)
hi sir,iam graduate of the department of ECE at RGUKT nuzvid, i want to do project based on brain tumour segementation using MRI images .so i want code for that .will u plz send it to my mail.i will be thankfull to u sir
xu shuai (view profile)
Hi sir，I am a graduate of the Department of Mathematics at Shanghai University ，I am learning medical image segmentation using Matlab. could you please send me your code my e-mail is Xs_222222@shu.edu.cn
Ashlyn Aiello (view profile)
Hi. Would it be possible to get the code you used in the video? I'm working on a project at BU that uses similar analysis of large series of medical images. Thanks.
ajma@bu.edu
Edgar Villagran (view profile)
I would like too much to receive the code you use in the video. I want to use it for teaching purposes in Biomedical Engineering and of course the citations and aknowledgmnts to you all the time will be provided. villagran.e@gmail.com
Jahanzeb Saqib (view profile)
Mingyang Wang (view profile)
Hello, currently studying this video as a part of a research project, Could you please send me the code you used in your video?
happymingyang@gmail.com
Thanks!
Elliott Fullerton (view profile)
Hello, Looking into MRI as part of a PhD project. Could you please send me your code from the video. e.fullerton@lboro.ac.uk
Kind Regards
Elliott
islam abdelhamid (view profile)
could you please send me your code my e-mail is iabdelhamid3@gmail.com
Sue123 (view profile)
Hello,
I downloaded code but it is not working. I had error code this :
Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
I need help you. Thank you more much!
My email id is:971183504@qq.com
Shujin Zhu (view profile)
Hi sir, this case seems useful to me, it will be great if you could share the code with me s66zhu@uwaterloo.ca . Much appreciated!
Srinivas Saripalle (view profile)
Hi, I am learning medical image segmentation using Matlab. Can you please send the package of the project. My email is: ssaripalle@gmail.com
Thanks
Sri
Tony Kong (view profile)
Hi, I'm a computer science master student at Northeastern University. Could you please send me the package of the project? My email is kong.zhe@husky.neu.edu Thank you very much
Courtney Nelson (view profile)
Hi, I'm a biomedical engineering student at The Catholic University of America and I'm working on a project to analyze the gray versus white matter. could you please email me codes or advice to 83nelson@cua.edu
Thank you!
Lorenzo Valente (view profile)
Hi, I'm a computer science student of the 'University of Salerno and I'm writing a thesis on the MRI images. Could you please send me the whole package of the project?
Thank you!
email: valentelorenzo@live.it
Christopher Rahimi (view profile)
Hello,
I'm trying to estimate ventricle volume in the brain using matlab. Can you please email me codes and any advice you may have @ ckrahimi18@gmail.com
Thank You
reham targam (view profile)
Hi Sir, can you email me the code for my project reference? Email to reham.targam@gmail.com
swarada kanap (view profile)
need coding on image segmentation and morphological operators on brain tumor images
yash.hajare29@gmail.com
Aliatabassum Abdulsalam (view profile)
How to extract tumor after fuzzy c-mean segmentation applied on MRI brain images
wu w (view profile)
if it is possible could you please send me your code my e-mail is : wemx50029@yahoo.com.tw
Elif Akcay (view profile)
if it si possible could you please send me your code my e-mail is : eliftugbaakcay@gmail.com
sam CP (view profile)
I want to remove skull from brain using morphological operations and thresholding.. i have wrote the following code ,but i didn't get skull stripped MRI..Please guide me..
clear all; clc [filename pathname] = uigetfile({'*.jpg';'*.bmp'},'Select MRI'); inputimage=strcat(pathname, filename); I = imread(inputimage);
figure,imshow(I), title('input');
se = strel('disk',7);
closeBW = imclose(I,se); figure, imshow(closeBW);title('close operation');
afterOpening = imopen(closeBW,se); figure, imshow(afterOpening,[]);title('open operation');
J=I-afterOpening; figure, imshow(J,[]);title('Skull of MRI');
K=I-J; figure, imshow(K,[]);title('Skull removed MRI');
sai govind (view profile)
could you please provide me this code.
thank you.
govind.sai62@gmail.com
Jessica Xian (view profile)
Hello,
Would it be possible to send the coding to my email: zcqsjxi@ucl.ac.uk
Thank you!
Hai Nguyen (view profile)
need coding on image segmentation
Email: thanhhai7486@gmail.com
Thanks very much
Preeti Sharma (view profile)
need coding on image segmentation
Arjun KV (view profile)
could you mail me the code for the same.
arjungopinath310@gmail.com
shabaz khan (view profile)
sir, iam a PG student doing project on the mri brain white matter segmentation.Will you please help me to get the database for the same . My mail id is shabazkhanbme15@gmail.com
Henry Ortega (view profile)
Hello, I am not sure how this comment section works, but could you send me this code about segmentation? Thank you in advance.
hortega@fisica.edu.uy
Jash Bhayani (view profile)
Hi, Could you please email the code for the same? Thanks!
email id: jashbhayani18@gmail.com
Jash Bhayani (view profile)
Hi, Could you please email the for the same? Thanks!
email id: jashbhayani18@gmail.com
Tran Thai Son (view profile)
hello sir , can you email me the code at
tranthaison226@gmail.com ?
I need it to make segmentation for the brain image
it very imp so please send the code
thank you very much!!
Seung Yong Lee (view profile)
hello sir , can you email me the code at
lsy920607@naver.com ?
I need it to make segmentation for the brain image
it very imp so please send the code
thank you very much!!
Seung Yong Lee (view profile)
Sae Bom Lee (view profile)
Hello, I need this code for my project.
Can you send me this code about MRI Brain segment?
Please send email me.
My email is newspg93@gmail.com
Thank you.
Bala Subramaniam (view profile)
Could you please share the codes for this topic ??Thanks in advance
Mail id : bsubramaniam11@gmail.com
Soo Jong Kim (view profile)
In Medical Image Processing with MATLAB
Can you send me his code in that lecture?
please I need it..
My email is ksj9108@naver.com
thank you
faisal aziz (view profile)
can any one send me the algorithm for 3d reconstruction from segmented mri 2d slices in matlab????
Yameng Liu (view profile)
My email is yameng.liu@duke.edu
Yameng Liu (view profile)
Hello I am a graduate student working on medical image segmentation. Can you share me the codes?
Thanks
fatma (view profile)
Hello,
I downloaded code but it is not working. I had error code this :
Error using imview (line 7)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
I need help you. Thank you very much!
email :fatmademirezen@gmail.com
reshma hiralal (view profile)
hello sir,
i am a pg student working in image processing, i am working on MRI brain image segmentation. can u share me the codes. as the downloaded code is not working.
mail id: reshma.hiralal@hotmail.com
Wenjun Wu (view profile)
Hello,
Can you email me the code at wuwenjun1995@gmail.com?
Thank you very much!
@MSM (view profile)
hello sir , can you email me the code at
masusm89@hotmail.com
I need it to make segmentation for the brain image
thank you very much
Hong Shan Lim (view profile)
Hi Sir, can you email me the code for my project reference? Email to hslim013@unisim.edu.sg
Thanks
saladi saritha (view profile)
can you please provide me the code for my study project? my email id: saritha.saladi3188@gmail.com
Adnan (view profile)
Will you please send me the code for study purpose?
My email is write2adnanalamkhan(at the rate)gmail.com
fateen nur nadhira (view profile)
can you send the code to me please? fateennad94@gmail.com
fateen nur nadhira (view profile)
can you sens the codes to me, i need to do brain segmentation for alzheimer disease
Cixian Lu (view profile)
aalishan ali (view profile)
can you send me the code please ? aalishan0806425@gmail.com
sheetal wadhai (view profile)
Could you send me the code please?
it very imp so please send the code
sheetalwadhai05@gmail.com
Mac (view profile)
Could you send me the code please?
mrungta13@gmail.com
Thanks!
orchis_2005 (view profile)
Can I get the codes please?
Thanks!
shaheen kanwal (view profile)
could you send me the code please ?
shaheenkanwal1995@gmail,com
Thanks :)
AKS (view profile)
Can I get the codes please?
Thanks!
Maria Kline (view profile)
I would like to do something similar, except with a knee MRI, very fascinated by this could you please send me it at maria.kline@yahoo.com
mima zebouchi (view profile)
i wont to segmentation of whitematter and gray matter
hmmmmm (view profile)
my project is brain MRI segmentation and 3D reconstruction ...
can you please send to me segmentation code in this address zameerabbas72@gmail.com
mima zebouchi (view profile)
sr i have a problem:?? Error using ==> lt
Matrix dimensions must agree.
Error in ==> brainscan2 at 116
mriBrainPartition=(mriAdjust < level & mriAdjust>= 0)==2;%2=graymatter
>>
mima zebouchi (view profile)
my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse :
mimazebouchi@gmail.com
Sheena Ratnam Priya (view profile)
could you please help me on tumor extraction and area calculation?
sheenasandie1794@gmail.com
merve acar (view profile)
Thnak you Sir for the nice work !
my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : merve.acar@atauni.edu.tr
thnak you in advance !
Regards
Feten (view profile)
It's OK the problem is fixed. After mading modification described on
http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic#comments
I restart the matlab and it 's working.
Feten (view profile)
I am using matlab on Linux.
Could you help me to fix this problem:
Reference to non-existent field 'toolbar'.
Even after trying the fix described on 'http://www.mathworks.com/matlabcentral/fileexchange/764-sliceomatic'
Traceback of error:
Error in figmenus>OverrideStickyUserPreferences (line 449)
set(d.toolbar,'visible',prefs.anntoolbar_Checked)
Error in figmenus (line 105)
d = OverrideStickyUserPreferences(d);
Error in sliceomaticfigure (line 136)
d = figmenus(d);
Error in sliceomatic (line 203)
d = sliceomaticfigure(d);
Error in analyze_series8 (line 68)
sliceomatic(double(D))
By 'Justas Bezaras'
Ayani Kapugama Arachchi (view profile)
Hi..
I got these errors while running the sample
Error in ==> imtool at 173
if ~internal.images.isFigureAvailable()
??? Output argument "hout" (and maybe others) not assigned during call to
"C:\Users\nethma\Desktop\MATLAB\R2011a\toolbox\images\imuitools\imtool.m>imtool".
Error in ==> imview at 18
hh = imtool(varargin{:});
Error in ==> analyze_series8 at 55
imview close all
Please Help me, HOW TO RESOLVE THIS ERROR??
AZama (view profile)
I am using .dcm files of 512x512 size, i am getting an error
voxel_size =
0.4492 0.4492 5.0000
Name Size Bytes Class Attributes
D 512x512x2 1048576 uint16
Index exceeds matrix dimensions.
Error in analyze_series8 (line 49)
im = squeeze(D(:,:,i));
PLEASE HELP ME, how to resolve this error
Ganesh Raut (view profile)
Manu BN (view profile)
sdh32 (view profile)
To fix the error:
Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');
Get the function vline from:
http://www.mathworks.com/matlabcentral/fileexchange/1039-hline-and-vline
To fix the error
Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
change the instances of imview to imtool in analyze_series8.
iza (view profile)
Help me solve this error...
Undefined function 'vline' for input arguments of type 'double'.
Error in thresh_tool (line 90)
h_lev = vline(my_level,'-');
Peng Dai (view profile)
great tools, it's based on old version of Matlab. have to make a little change to run on version2012
Hieu Lam (view profile)
hi, i am using matlab R2012b and they have the error:
Error using imview (line 8)
Function IMVIEW has been removed. Use IMTOOL instead.
Error in analyze_series8 (line 47)
imview(im,[0 max_level])
How to fix it? thanks
Xinzhou (view profile)
Hello, I am student learning medical image processing by applying matlab. When I use the function "threshold_tool' in this folder. It shows function 'vline' not defined. Is there any way can solve this problem. Thank you so much.
shruti (view profile)
Sir,I am searching for segmentation of gray matter from T1 weigheted brain MR images.Can u plz send me the code to this address.
My id:shruti.gubbi77@gmail.com
sp 2013 (view profile)
Sir, pls give me the matlab code for whitematter sementation from mr images my mail id is :adish321309@gmail.com
sp 2013 (view profile)
sp 2013 (view profile)
Sir,I am searching for segmenting white matter from a T2 weighted brain MRI scan. But I could not get the correct tutorial to follow it. Please suggest me an algorithm that works better and accurately to segment the gray matter alone from the T2 wieghted MRI scan image my mail id is:adish321309@gmail.com
sp 2013 (view profile)
Sir i'm a student and my project is mild brain injury detection
Can you please send to me the segmentation code in this addresse : adish321309@gmail.com
sp 2013 (view profile)
sir, iam a PG student doing project on the mild brain injury detection.Will you please help me to get the database(t2 weighted mri of mild brain injured images) for the same . My mail id is adish321309@gmail.com
NTUT (view profile)
Hello Sir, I am PhD student of National Taipei University of Technology. i doing a project in dementia with MRI brain images using freesurfer and Matlab software. can you please tell me how to run new subject of images in Matlab. thank you! My email id is: avichandra0420@gmail.com
majid SHOKRI (view profile)
sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is majidshokri_boj@yahoo.com
redouan pitrochka (view profile)
Thnak you Sir for the nice work !
Please i'm a student and my project is brain tumor detection.
Can you please send to me the segmentation code in this addresse : redouan_lahmyed@live.fr
thnak you in advance !
Regards
soniya joy (view profile)
Aysha (view profile)
sir, iam a PG student doing project on the mri brain tumor segmentation.Will you please help me to get the database(mri tumor brain dicom images) for the same . My mail id is jasaem.21@gmail.com
Fatemeh (view profile)
If you want to download this useful package, click on download submission button, http://www.mathworks.com/matlabcentral/fx_files/4879/6/MRI_Brain_Scan.zip
haribabu (view profile)
how to download this package..
please help me...
Hg (view profile)
devabhaktuni phaneendrababu (view profile)
Can you please help me how to download this file
SIVA (view profile)
its very use ful ,,,.
naila (view profile)
I couldn't able to download the code. please can any one help me?
elise lau (view profile)
I'm new to matlab, doing segmentation of brain tumor from 2D MRI images for my project. anyone have the coding? can help me?thx very much..
yuvaranjini (view profile)
Really good work sir. It would be nice if you add some description to the code.
It helps me a lot
mariam (view profile)
dear All, would you please guide me how I can 1/8 of volume image I mean I can reconstruct the volume image but I do not know how to extract for example 90 degree volume slice of it. I appreciate your help
priya dharsini (view profile)
good work sir. iam a PG student doing project on the same. I dont know how to split white matter from a brain MRI image using matlab.Will you please help me. My mail id is dharsiniece@gmail.com
manoj (view profile)
high to all........actually i am beginner in image segmentation could anybody help me
my email id is manoj4736@gmail.com
thanks
porngamol sitlaothaworn (view profile)
it helps me in senior project :)
Nurhasanah Ivansyah (view profile)
it's very good tutorial. Very good coding for matlap brain image processing.
but can you help how to segmenting brain white matter, gray matter and cerebrospinal fluid. if you have algoritm or code in matlab, help give me.
i really need....
Dr. Deepak Kumar Rout (view profile)
Robert Bemis (view profile)
Note for users who get stuck by the IMVIEW error. That function was replaced by IMTOOL (years ago). In analyze_series8.m just replace all occurrences of "imview" with "imtool" (and save).
See also
>> doc imview
Preeti (view profile)
i am getting the error in imtool and not able to remove even downloading the patch as advised. please help.
sheldon (view profile)
your work is good. it is helping me a lot. but i am facing a small problem if i give input(dcm files) of larger size like 138 kb other than that you used is 129 kb. please help me out with this. i am using matlab r2008a. i get the error;
voxel_size =
0.9375 0.9375 6.0000
Name Size Bytes Class Attributes
D 256x256x12 1572864 uint16
??? Index exceeds matrix dimensions.
Error in ==> analyze_series8 at 43
im = squeeze(D(:,:,i));
after the dicom files stored are read.
Nandan S (view profile)
Make it more explanatory. so that it could be efficient for a beginner.
i wanted a code for segmentation of brain tumor from 2D MRI images.
getting the following error in R2007
??? Output argument "hout" (and maybe others) not assigned during call to "C:\Program Files\MATLAB\R2007a\toolbox\images\imuitools\imtool.m (imtool)".
Error in ==> imtool at 155
close_all = nargin == 2 && ischar(varargin{1}) && ischar(varargin{2}) && ...
Error in ==> imview at 18
hh = imtool(varargin{:});
Error in ==> analyze_series8 at 53
imview close all
me sirve para el trabajo de grado
Excellent code
Very good coding for matlap brain image processing
Good tutorial.
matlab codeing on brain image segmentation
very good!
Excellent presentation as an introductory talk for those who start MRI analysis with MATLAB.
Thank you very much!
no
help ful for the study of MRI
I am in search for xray enhancement
It's helpful for my study in medical imaging. I've not been kowning that MATLAB could also deal with the DICOM files.
program with Matlab software for leaf classification & image segmentation
thanks alot
ww
good ,i like it
it can help the students interested in the image processing.