Region Growing

Segmentation by growing a region from seed point using intensity mean measure

Simple but effective example of "Region Growing" from a single seed point.The region is iteratively grown by comparing all unallocated neighbouring pixels to the region. The difference between a

Region Growing (2D/3D grayscale)

Recursive region growing algorithm for 2D/3D grayscale images with polygon and binary mask output

A recursive region growing algorithm for 2D and 3D grayscale image sets with polygon and binary mask output. The main purpose of this function lies on clean and highly documented code.Usage:[P, J] =

Microscopy Image Browser (MIB)

MIB is a package for segmentation of multi-dimensional (2D-4D) microscopy datasets

Simple single-seeded region growing

Segmentation by growing a region from user defined seed point, using intensity mean measure.

Simple and efficient (only one loop) example of "Region Growing" algorithm from a single seed point.The region is iteratively grown by comparing all unallocated neighbouring pixels to the region

Stereo testbed v0.1

Testbed for analysis, evaluation and comparison of stereo matching algorithm.

color image segmentation

segment color image robust to texture

An implementation of [1], it works in follows:1. Compute the Jmap.2. Compute the valleys of Jmap.3. Valleys growing as the oversegmentation.4. Region merging.Example usage:%labels =

RegGrow

Region growing algorithm (supports 2D, 3D, and ND)

This function implements a region growing algorithm for 2D, 3D and ND.In short this means that this function looks at all the pixels/voxels surrounding the segmented region and adds those that have a

bwgrowregions: Multi-class region growing for binary images

aka Geodesic Voronoi. Useful for centerline- or skeleton-based image segmentation.

# *bwgrowregions*: Multi-class region growing for binary images[](https://github.com/WD40andTape/bwgrowregions)[![View on File

Region Growing (2D/3D) in C

C implementation of a basic region growing algorithm for images and volumes

A simple image segmentation method. The segmented region grows from aseed point by comparing neighbor pixels/voxels.If a neighbor pixel/voxel is smaller then the specified threshold value it becomes

thomaskuestner/MoCoGUI

An MR Motion Correction toolbox for registration and evaluation

Region Growing - Segmentation

Segmentation code based on region growing algorithm

This code segments a region based on the value of the pixel selected (the seed) and on which thresholding region it belongs. Based on the region growing algorithm considering four neighboring pixels.

Region Based Stereo Matching Algorithms

Disparity map generation by region based stereo algorithms

the Readme.txt file to see how to run codes.Citation:Alagoz, B. B. (2008). Obtaining depth maps from color images by region based stereo matching algorithms. arXiv preprint arXiv:0812.1340.

GIFT

Group ICA/IVA software (MATLAB)

Clinic heart disease system

RNA toolbox to extract parameters from radionuclide angiography (RNA) images.

- Chenvese: Implemented by Yue Wu2- regionGrowing: written by Daniel Kellner, 20113- regiongrowingX: written by D. Kroon, University of Twente4- ApEn_slow: written by Amir Omidvarnia, PhD5- MyHistogram

neuropoly/axonseg

AxonSeg is a GUI that performs axon and myelin segmentation on histology images.

image segmentation

using region growing

image segmentation by region growing method

Microvessel Segmentation, analysis in Immunohistochemistry slices

Automatic segmentation and morphological analysis of microvessels in histological tumour sections

An automatic algorithm for the segmentation and morphological analysis of microvessels in immunostained histological tumour sections.regionGrowingCells is a matlab programme that loads images that

JSEG - Unsupervised Segmentation of Color-Texture Regions in Images

JSEG - Unsupervised Segmentation of Color-Texture Regions in Images

criterion to local windows in the class-map results in the “Jimage,”in which high and low values correspond to possible boundaries and interiors of colortextureregions. A region growing method is then used to

Intensity inhomogeneity correction

LEMS method to correct for intensity inhomogeneity of MR images

GIBOC-Knee-Coordinate-System for Tibia Femur & Patella

Automatic creation of anatomical coordinate system on the knee bones (Femur, Patella and Tibia)

Edge Detection and Segmentation

Edge Detection Prewitt Roberts Log Canny Sobel Straight Line Hough Transform quadree region growing

Edge Detection Prewitt Roberts Log Canny Sobel Straight Line Hough Transform quadree region growing threshold watershed

PAREIDOLIA

A Toolbox and GUI for pointcloud processing

Color-Image-Segmentation-Using-Region-Growing-and-Region-Mer

Unsupervised color image segmentation using Region Growing and Region Merging

This project is reimplementation of research on color image segmentataion using region growing and region merging respectively. We prepared a demo code that you can load flower image and see 4

Growing a Compiler

Bootstrap compilers starting from a tiny compiler-compiler.

Mesh voxelisation

Voxelise a triangular-polygon mesh.

Finger region localisation

Localisation of the finger region using a simple mask filter method.

return the location of these edges and will return a binary mask indicating the finger region.Note that the implementation assumes that the upper edge is located in the top-half of the image and that the

Plot 2D/3D region

The program plots convex linear closed regions in 2D/3D.

The program plots convex linear closed regions in 2D/3D. The region is a subset of R2 or R3 such that Ax>=b and lb<=x<=ub. It is also possible to plot points in the same plot.(See help

Neural Gas and Growing Neural Gas Networks

MATLAB implemenattion of Neural Gas and Growing Neural Gas for Clustering and Topology Learning

Unsupervised Learning with Growing Neural Gas (GNG) Neural Network

Learns data clusters and their topology in n-dimensional space by using the Growing Neural Gas net.

The Growing Neural Gas (GNG) Neural Network belongs to the class of Topology Representing Networks (TRN's). It can learn supervised and unsupervised. Here, the on-line, unsupervised learning mode is

GWR and GNG Classifier

A Growing When Required and Growing Neural Gas classifier

An extension for classification including 2 types of Neural Gas, the Growing When Required (GWR) and Growing Neural Gas (GNG). Based on (Konsoulas, 2013) see GNG_LICENSE - with a wrapper for the GNG

Segmentation_Growing(img,sx1,sx2,sy1,sy2,f)

This function grows from a certain area with a weigthing to the outer boarder of the object

: http://physingo-en.blogspot.de/2016/12/matlab-segmentation-growing.html )function [region, area, seed, sx1, sx2, sy1, sy2] = Segmentation_Growing(img,sx1,sx2,sy1,sy2,f)%img is the image which is segmentated%sx1 and sy1 are the values of the upper left corner and%sx2 and

Region of interest Extraction by free hand method

ROI_extract.m

Run the code (ROI_extract) in Matlab, and chose your image which you want to extract a region of interest from it, and select the ROI you will get it easily.

Image segmentation using statistical region merging

Very simple and fast image segmentation code using statistical region merging.

From the paper : Nock, Richard and Nielsen, Frank 2004. Statistical Region Merging. IEEE Trans. Pattern Anal. Mach. Intell. 26, 11 (Nov. 2004), 1452-1458. It uses an a disjoint-sets data structure

plotboxpos

Returns the position of a plotted axis region

plotboxpos.m: Plot box (visible) positionAuthor: Kelly KearneyThis repository includes the code for the plotboxpos.m Matlab function.This function returns the position of the plotted region of an

Lynx MATLAB Toolbox

A toolbox for the design of complex machine learning experiments

brainSurfer

MATLAB toolbox for visualizing brain data on surfaces.

feature of the datacursor is the ability to see what ROI within an atlas intersects with a datatip. If you have an atlas loaded with labels, the datacursor box tells you the name of the region in the atlas

Fast Continuous Max-Flow Algorithm to 2D/3D Multi-Region Image Segmentation

It implements the fast continuous max-flow algorithm to 2D/3D multi-region image segmentation.

This software implements the fast continuous max-flow algorithm to 2D/3D multi-region image segmentation (Potts model). It provides three implementations: matlab, C and GPU (cuda based). All the

siibralab

Matlab interface to the siibra toolsuite

connected data resources is constantly growing, and includes measures of cellular and molecular architecture, parcellation-based connectivity, and microscopy image resources hosted on cloud resources

Nonlinear Diffusion Toolbox

Set of functions to perform nonlinear diffusion on images.

geoimread

Reads a sub region of a geotiff or geojp2 image.

GEOIMREAD reads a sub region of a geotiff or geojp2 image. % Syntax A = geoimread(filename) A = geoimread(filename,xlim,ylim) A = geoimread(filename,latlim,lonlim) A = geoimread(...,buffer

HDL Generation for lucky region fusion algorithm

Simulink model for HDL generation of lucky region fusion algorithm and matlab implementation of the lucky region fusion algorithm

Matlab code for lucky region fusion and test data set are present in the files. Simulink model for the HDL generation of the lucky region fusion algorithm is also present

Active Shape Growing 2D Box Fit

An active box shape grows from the seed point which is given by the user.

The boxfit.m function is developed for growing an active box shape which is initialized at the given seed point location. The active box shape grows in different orientation and it tries to find the

Convert Voronoi cells to region mask

Convert Voronoi cells to region mask

Real time frame analysis - for Andor cameras

Recording software for Andor cameras with the possibility of implementing analysis in real time

raacampbell/shadedErrorBar

Creates an attractive shaded error region rather than discrete bars.

shadedErrorBar shadedErrorBar is a MATLAB function that creates a continuous shaded error region around a line rather than discrete bars.The error region can either be specified explicitly or

ORACM: Online region-based active contour model

A new online region-based active contour model (ORACM) is proposed in this paper.

A new online region-based active contour model (ORACM) is presented.The computational cost of ORACM is 3.75 times less than the traditional active contour models.ORACM suitable for real-time image

Terrain Elevation

Downloads US terrain elevation from the USGS in 1/3rd arc-second resolution.

arc-seconds).yellowstoneElevData = region.readelevation([44.255813, 44.649888], [-110.861772, -110.183366], 'sampleFactor', 5, 'display', true);% Graph the elevation data for Yellowstone, using latitude and longitude% for the x and

Selective Level Set Segmentation Using Fuzzy Region Competition

Region competition level set method is enhanced for arbitrary combination of selective segmentation

segmentation that is dependent on image content and evolutional strategies. In this study, a new level set formulation is proposed by using fuzzy region competition for selective image segmentation. It is able

Graph_Signal_Processing

Signal Processing on non-euclidien domain signals

FEM19

Finite element library for solving plane elasticity problems

Chebfun V4 - old version; please download current version instead

Numerical computation with functions

2D FDTD of a region with Perfect Electric Conductor boundary

2D FDTD of a region with Perfect Electric Conductor boundary condition

Randomforest Example

create dataset, grow trees, classifying data and visualization

dataset by using a spiral function3. rt1.m --main script for growing the forest4. branch.m --class of each branch of a tree for growing a tree5. sbranch.m --class of each branch with smaller size of memory

2D FDTD of a region with Perfectly Matched Layer boundary

2D FDTD of a region with Perfectly Matched Layer (PML) boundary condition

RegionCovarianceDescriptor.zip

Pure Matlab implementation of Region Covariance Descriptors

Pure Matlab implementation of Region Covariance Descriptors a described in "Region Covariance: A Fast Descriptor for Detection and Classification" by Oncel Tuzel, Fatih Porikli, and Peter Meer.

Region Adjacency Graph (RAG)

Computes the graph of adjacent regions in a labeled image

Computes region adjacency graph of a labeled 2D or 3D image. Two regions are considered as neighbor if they are separated by a small number of pixel in the horizontal or vertical direction, as well

The HDR Toolbox

The HDR Toolbox is a toolbox for processing High Dynamic Range (HDR) content.

geoscience-community-codes/GISMO

GISMO - a framework for scientific research in seismology/infrasound

Petri Nets Building Blocks Library

Petri Nets Building Blocks Library for the construction of net models with ease in Simulink models

Satellite Orbit Computation

Modified SGP4 code for GPS interface