Biological signal and medical image processing, computational anatomy, biomechanics, machine learning

Submitted

IsoCut

Extract/visualize level set(s) of a scalar field defined at the vertices of a surface mesh

17 days ago | 8 downloads |

Submitted

Detect outliers in multivaraite datasets

Compute robust estimates of mean and covariance, and flag potential multivariate outliers

6 months ago | 6 downloads |

Submitted

Exact minimum bounding spheres and circles

Compute exact and approximate minimum bounding spheres/circles of 3D/2D point sets

6 months ago | 24 downloads |

Submitted

Fast fuzzy c-means image segmentation

Segment N-dimensional grayscale images into c classes using efficient c-means or fuzzy c-means clustering algorithm

6 months ago | 32 downloads |

Submitted

Suite of functions to perform uniform sampling of a sphere

Toolbox for generating uniform sampling patterns and decompositions of a unit sphere

1 year ago | 18 downloads |

Submitted

Rigid body parameters of closed surface meshes

Fast computation of exact rigid body parameters of closed triangular surface meshes using divergence theorem

2 years ago | 11 downloads |

Submitted

DecimatePoly

Simplify a 2D closed contour/polygon to within user-defined boundary offset tolerance

2 years ago | 6 downloads |

Submitted

Exact histogram equalization and specification

Perform exact histogram specification or equalization of 2D grayscale images

2 years ago | 12 downloads |

Answered

PCA on high dimensional data

A 13952736-by-104 data matrix (with observations along rows and variables along columns) will take up 13952736*104*8/2^30 =...

PCA on high dimensional data

A 13952736-by-104 data matrix (with observations along rows and variables along columns) will take up 13952736*104*8/2^30 =...

2 years ago | 0

| accepted

Answered

Fitting scattered data to multiple cosine functions

Below is an example where I use brute-force search to find an optimal set of sinusoid parameters that best fit an unorganized da...

Fitting scattered data to multiple cosine functions

Below is an example where I use brute-force search to find an optimal set of sinusoid parameters that best fit an unorganized da...

2 years ago | 1

| accepted

Answered

imshow() not working

Use syntax: imshow(im,[]) when im has non-integer format. Or just do this: im = imread('/MATLAB Drive/My Project/ima...

imshow() not working

Use syntax: imshow(im,[]) when im has non-integer format. Or just do this: im = imread('/MATLAB Drive/My Project/ima...

2 years ago | 0

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Answered

distance of points to points calculation

Use <https://www.mathworks.com/help/stats/knnsearch.html#namevaluepairarguments 'knnsearch' function>. For example: [idxA,D_...

distance of points to points calculation

Use <https://www.mathworks.com/help/stats/knnsearch.html#namevaluepairarguments 'knnsearch' function>. For example: [idxA,D_...

2 years ago | 0

| accepted

Answered

How is the number of bins chosen with the auto binning algorithm in histcounts?

'histcounts' first estimates width of the histogram bins using 'scottsrule': rawBinWidth = 3.5*std(data)/(numel(data)^(1/3...

How is the number of bins chosen with the auto binning algorithm in histcounts?

'histcounts' first estimates width of the histogram bins using 'scottsrule': rawBinWidth = 3.5*std(data)/(numel(data)^(1/3...

2 years ago | 0

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Answered

Barycentric Coordinates of a spherical triangle

This can be done in four steps: 1) Compute linear transformation (T) that maps triangle A to its counterpart B on the sphere....

Barycentric Coordinates of a spherical triangle

This can be done in four steps: 1) Compute linear transformation (T) that maps triangle A to its counterpart B on the sphere....

2 years ago | 0

Answered

How do I use a .lut file (or the equivalent in MATLAB) to reference pixels in a grayscale image and assign them new values for pseudocoloring based on the LUT?

There is a Matlab function that maps gray values to RGB values using custom made look-up-tables. Its called 'ind2rgb': <https://...

How do I use a .lut file (or the equivalent in MATLAB) to reference pixels in a grayscale image and assign them new values for pseudocoloring based on the LUT?

There is a Matlab function that maps gray values to RGB values using custom made look-up-tables. Its called 'ind2rgb': <https://...

2 years ago | 0

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Answered

Transformation of the complex plan: Conformal Mapping

Modified code ('conformal_map_demo') is attached below. In principle, this piece of code should should allow you to visualize an...

Transformation of the complex plan: Conformal Mapping

Modified code ('conformal_map_demo') is attached below. In principle, this piece of code should should allow you to visualize an...

2 years ago | 1

Answered

How to sum each column element of one matrix with all column elements of another matrix?

Do kron([a b;c d],[1;1]) + kron([1;1],[i j;k l]) Here is an example using symbolic expressions syms a b c d i j k l...

How to sum each column element of one matrix with all column elements of another matrix?

Do kron([a b;c d],[1;1]) + kron([1;1],[i j;k l]) Here is an example using symbolic expressions syms a b c d i j k l...

2 years ago | 0

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Answered

Generating sets of non repeating random numbers

Here is an example: S=reshape(randperm(40),[],4); All elements in S will be in the range [1 40] and unique. From this it...

Generating sets of non repeating random numbers

Here is an example: S=reshape(randperm(40),[],4); All elements in S will be in the range [1 40] and unique. From this it...

2 years ago | 1

Answered

3D plane plotting restricted by 3 points

Equation of a plane is determined uniquely by any 3 (noncollinear) points lying on the plane. Based on your question, it sounds ...

3D plane plotting restricted by 3 points

Equation of a plane is determined uniquely by any 3 (noncollinear) points lying on the plane. Based on your question, it sounds ...

2 years ago | 0

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Answered

Could anyone help me with extracting similar features( to be used as corresponding points)in two images which need to be registered together?

Hey, Poupack, here is <https://drive.google.com/open?id=1SRXAVFkbHPfQ9jLjsFL-fkfWz2KrKJAO link> to a function ('pairwise_his...

Could anyone help me with extracting similar features( to be used as corresponding points)in two images which need to be registered together?

Hey, Poupack, here is <https://drive.google.com/open?id=1SRXAVFkbHPfQ9jLjsFL-fkfWz2KrKJAO link> to a function ('pairwise_his...

2 years ago | 0

| accepted

Answered

How can I extract the slices of a 3D matrix in x-direction from a 3D matrix?

Suppose you have G, which is a Y-by-X-by-Z 3D array, then i-th xy slice: G_yx=G(:,:,i); % Y-by-X array i-th xz slice...

How can I extract the slices of a 3D matrix in x-direction from a 3D matrix?

Suppose you have G, which is a Y-by-X-by-Z 3D array, then i-th xy slice: G_yx=G(:,:,i); % Y-by-X array i-th xz slice...

2 years ago | 2

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Answered

Multivariate nonlinear regression model fitting

If the function you are trying to fit is linear in terms of model parameters, you can estimate these parameters using linear lea...

Multivariate nonlinear regression model fitting

If the function you are trying to fit is linear in terms of model parameters, you can estimate these parameters using linear lea...

2 years ago | 1

| accepted

Answered

How to export 3D spheres (3D plot) generated in Matlab to ANSYS or Abaqus. ?

The builtin 'ellipsoid' and 'sphere' functions produce bad quality meshes (in terms of element shapes and connectivity of the ve...

How to export 3D spheres (3D plot) generated in Matlab to ANSYS or Abaqus. ?

The builtin 'ellipsoid' and 'sphere' functions produce bad quality meshes (in terms of element shapes and connectivity of the ve...

2 years ago | 1

Answered

Is there a way to open music and play it?

Yeah, there is a way. Here is an example: % Get sample audio file from the web [y,Fs]=webread('http://www.worldnationala...

Is there a way to open music and play it?

Yeah, there is a way. Here is an example: % Get sample audio file from the web [y,Fs]=webread('http://www.worldnationala...

2 years ago | 0

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Answered

How do I compute the maxpool of a image? Let us say stride of 2,2 on a mxn matrix?

Here is an example: % Sample image im=imread('cameraman.tif'); % sample image % 4 pixels comprising non-overlappi...

How do I compute the maxpool of a image? Let us say stride of 2,2 on a mxn matrix?

Here is an example: % Sample image im=imread('cameraman.tif'); % sample image % 4 pixels comprising non-overlappi...

2 years ago | 0

Answered

How do I plot a plane that has points of different values?

Actually, based on the sample picture you provided, you have a total of 17x21 grid points, and total number of cells in the g...

How do I plot a plane that has points of different values?

Actually, based on the sample picture you provided, you have a total of 17x21 grid points, and total number of cells in the g...

2 years ago | 2

| accepted

Answered

Obtain Number of Pixels in Area Around Binary Image Object

To distinguish between points/pixels inside the ellipse vs. those outside, you need to know parameters of the ellipse. Here is a...

Obtain Number of Pixels in Area Around Binary Image Object

To distinguish between points/pixels inside the ellipse vs. those outside, you need to know parameters of the ellipse. Here is a...

2 years ago | 0

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Answered

subplot with multiple images - Pulling images from API into one figure

Hey, Vincent. Here is an example: [IM,IM_all]=PubChem_compound_image_stacking_demo; <</matlabcentral/answers/uploaded_fi...

subplot with multiple images - Pulling images from API into one figure

Hey, Vincent. Here is an example: [IM,IM_all]=PubChem_compound_image_stacking_demo; <</matlabcentral/answers/uploaded_fi...

2 years ago | 0

| accepted

Answered

How do you generate a Cumulative Histogram on R2014a?

Here is an example of how to use 'histcounts' and estimate percentiles: % Simulate data; N samples from standard Guassian P...

How do you generate a Cumulative Histogram on R2014a?

Here is an example of how to use 'histcounts' and estimate percentiles: % Simulate data; N samples from standard Guassian P...

2 years ago | 0

Answered

I want to plot a numerical integral in a mesh which is dependent of x and y. How can I do this?

The integrals in your equation can be evaluated analytically. Here how you can visualize C(z1,z2) and C(z1,z1): L = 20...

I want to plot a numerical integral in a mesh which is dependent of x and y. How can I do this?

The integrals in your equation can be evaluated analytically. Here how you can visualize C(z1,z2) and C(z1,z1): L = 20...

2 years ago | 0