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Dr. Soumya Banerjee


Harvard University

Last seen: 11 months ago Active since 2011

https://sites.google.com/site/neelsoumya/
Professional Interests: Biocomputing, machine learning, bioinformatics, complex systems, mathematical modelling, big data, computational biology, biologically inspired computing, complex systems

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Samples from gamma and Wishart
Test and draw samples from a gamma distribution and a Wishart distribution

3 years ago | 1 download |

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Generic function to perform logistic regression using elastic net regularization
Generic function to perform logistic regression using elastic net regularization

4 years ago | 1 download |

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Example MATLAB script to plot ROC curve for different classification algorithms
Example MATLAB script to plot ROC curve and compute AUC for 4 different classification algorithms

4 years ago | 15 downloads |

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A generic function that uses a Generalized Linear Model (GLM) with factors
A generic function that uses a Generalized Linear Model (GLM) with factors

4 years ago | 1 download |

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Function to compute Fisher's p-value for meta-analysis
Function to compute Fisher's p-value for meta-analysis.

4 years ago | 2 downloads |

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Generic function and example code for using neural networks
Generic function and example code for using neural networks for prediction.

4 years ago | 1 download |

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Generic example code and generic function for random forests
example code and generic function for random forests (checks out of bag errors and leaf size)

4 years ago | 12 downloads |

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Simple example and generic function for SVM binary classifier for general matrix
Simple generic function that takes two labelled classes and trains SVM classifier (general matrix).

4 years ago | 2 downloads |

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Simple example and generic function for SVM binary classifier
Simple generic function that takes two labelled classes and trains SVM classifier.

4 years ago | 12 downloads |

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Simple example code and generic function for random forests
Simple example code and generic function for random forests (checks out of bag errors)

5 years ago | 24 downloads |

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Function to plot co-ordinates from a file on a map
Code to load co-ordinate data from a file and call function to plot co-ordinates on a map.

6 years ago | 1 download |

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Generic function and example code for performing LASSO on GLM
Generic function and example code for performing LASSO on GLM and using it for prediction

6 years ago | 3 downloads |

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Generic function for LASSO on logistic regression
Generic function and example code for LASSO on logistic regression.

6 years ago | 3 downloads |

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Simple example and generic function to perform PCA
Simple example and generic function to perform PCA(principle components analysis)

6 years ago | 9 downloads |

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Example code and generic function to perform LASSO on GLM
Generic function to perform LASSO on generalized linear model (GLM).

6 years ago | 2 downloads |

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Function to perform Bayesian LASSO
Function to perform Bayesian LASSO (least absolute shrinkage and selection operator)

7 years ago | 2 downloads |

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Simple MATLAB example code and generic function to perform LASSO
Simple MATLAB example code and generic function to perform LASSO

7 years ago | 3 downloads |

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Bash script to compile MATLAB code in each directory
Iterative matlab compiler: this has Bash scripts to compile MATLAB code in each directory

7 years ago | 1 download |

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Scripts to run MATLAB on cluster using bsub
This is a set of scripts to run MATLAB in batch mode on the cluster using bsub

7 years ago | 2 downloads |

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Simple example and generic function for kmeans clustering
Simple generic function and example to perform kmeans clustering

7 years ago | 2 downloads |

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Bayesian Linear Regression
This is a set of MATLAB functions to do Bayesian linear regression

7 years ago | 4 downloads |

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Graphical User Interface for Solving Ordinary Differential Equations for In-Vitro Infection
A graphical user interface to solve a set of ordinary differential equations (in-vitro infection)

7 years ago | 2 downloads |

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Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease
Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals

7 years ago | 2 downloads |

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t-test and box plots for genes/compounds etc in healthy vs. disease
Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals

7 years ago | 1 download |

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healthy_disease_boxplot.zip
Box plots of measured quantity in healthy vs. disease in two cohorts

7 years ago | 1 download |

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Linear regression for multiple category data with different slopes for each
The function does OLS and RMA regression on data that is categorized into two different categories

7 years ago | 1 download |

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Linear regression with statistics for multiple category data
This function does linear regression with statistics for multiple category data (OLS and RMA)

9 years ago | 1 download |

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A Graphical User Interface for Solving Delay Differential Equations and doing Local Search
A GUI for solving a set of delay differential equations (DDEs) and local search for best solutions

9 years ago | 1 download |

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Graphical User Interface for Solving Ordinary Differential Equations
A Graphical User Interface for Solving Ordinary Differential Equations (Immune Response Model)

10 years ago | 3 downloads |

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Linear regression on log transformed data
A function that takes two column vectors and does linear regression on the data

10 years ago | 3 downloads |

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