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Parametric Mapping Scripts for MRI data

version 1.2.0.0 (236 KB) by matt birkbeck
Parametric mapping of MRI data

11 Downloads

Updated 29 Sep 2017

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These scripts allow you to create parametric mapping of 3D MRI data and extract the parameters:T1,T2,perfusion constant, fast apparent diffusion coefficient, diffusion constant and apparent diffusion coefficient.
You will need to download these as a supplement:
nifti libraries: https://uk.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image
threshold: https://uk.mathworks.com/matlabcentral/fileexchange/29372-thresholding-an-image
file sort: https://uk.mathworks.com/matlabcentral/fileexchange/47434-natural-order-filename-sort

Comments and Ratings (1)

odejackm1

Hi,
thank you for sharing the codes. I work with Bruker and at the beginning, its a bit different,in the t2mapSPINECHO.m code i don't succeed and find how can i save the Mask(binary Image) created by the threshold function. B=dir('*.png'); this command is not enough. i think i have missed a point.
Thank you

Updates

1.2.0.0

version 1.2: updated saturation recovery script and fit expression

1.1.0.0

Updated: Inversion Recovery Script to remove error message.

MATLAB Release Compatibility
Created with R2016a
Compatible with any release
Platform Compatibility
Windows macOS Linux

ParametricMapping/

ParametricMapping/niilib/

ParametricMapping/niilib/NIFFTI/

ParametricMapping/sortfiles/

ParametricMapping/thresholding/