Fulden Buyukozturk

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MathWorks

20 total contributions since 2014

Fulden Buyukozturk's Badges

Answered
How can I optimize parallel simulations of a SimBiology model?
Hi Colton, Yes, using SimFunction would be better as it offers easy and efficient parallelization and avoids repeated compilati...

7 months ago | 1

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Answered
Where is "RUN GROUP SIMULATION" in Simbiology Version 5.10 (R2020a)?
Hi Isabel, group simulation is no longer available starting 19b. Instead, you can create a scan program where you can input Dose...

8 months ago | 0

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Submitted

SimBiology COVID-19 SEIR Model Examples
SimBiology implementations of COVID-19 SEIR models from literature

11 months ago | 19 downloads |

Answered
Can I generate MATLAB code for a PK simulation built with SimBiology APP?
Hi Wei, If you right-click on the program on Model Analyzer and choose View program code, this will open the code for the pro...

12 months ago | 2

Answered
compartment is not being used in the model
Hi, You can ignore the "compartment is not being used in the model" warning. This warning is a benign bug with this version. S...

12 months ago | 0

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Answered
how to incorpolate various variables in simbiology model
Hi Kazutaka, You can export SimBiology model from GUI to MATLAB workspace and then use a script to add parameters. If you keep...

12 months ago | 0

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Answered
How to do model fitting in simbiology
Hello, You can "dose" Body Weight to achieve this: Set "body weight" column as a dose column - dose2 if you already have an a...

1 year ago | 1

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Answered
How to compute NCA in case of drug infusion in Simbiology? There are options for bolus doses but is there a option to compute for drug infusion regimen?
Hi Praveen, NCA functionality in SimBiology currently doesn't support infusion dosing. Fulden

2 years ago | 0

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Answered
Is there a good tutorial for incorporating some of the MCMC code into a custom task in Simbiology?
Hi Andrew, You can implement this, or custom analyses in general, in SimBiology either by creating a custom task on SimBiology...

2 years ago | 0

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Submitted

SimBiology model for PK/PD of antibacterial drugs
SimBiology model for PK/PD of antibacterial drugs

2 years ago | 3 downloads |

Answered
Noncompartmental Analysis - Using Simbiology Desktop (How to Export the calculated statistics?)
Hi Kevin, if you right click anywhere on the NCA table (the table below the "Table of NCA Parameters" title) you'll be able to c...

2 years ago | 1

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Answered
Pull a conditional subset of a matrix
If a is a matrix of characters, you can do: a= ['00110'; '01000'; '01011'; '01101']; i = strfind(a(:,end)', '1'); b = a(...

2 years ago | 0

Answered
search an array and find the row and column number of a certain element
Let's assume you have the following array: myArray = {'an' 'example' 'p'}; You can use _find_ to obtain indices where the...

2 years ago | 0

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Submitted

Modeling Synthetic Biology Systems with MATLAB and SimBiology
SimBiology model used in the webinar: Modeling Synthetic Biology Systems with MATLAB and SimBiology

4 years ago | 4 downloads |

Submitted

SimBiology implementation of PBPK model for Trichloroethylene (TCE)
SimBiology model describing the metabolism and distribution of TCE using a human PBPK model

4 years ago | 7 downloads |

Submitted

Using SimBiology for Mechanism-Based PK/PD Modeling in Preclinical & Discovery
Examples used in the March 2012 webinar: Using SimBiology for Mechanism-Based PK/PD Modeling

4 years ago | 1 download |

Submitted

SimBiology model for Target-Mediated Drug Disposition (TMDD)
SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model

4 years ago | 5 downloads |

Submitted

Modeling Biology with SimBiology: An Introduction for iGEM Teams
SimBiology model used in webinar: Modeling Biology with SimBiology: An Introduction for iGEM Teams

4 years ago | 7 downloads |